RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 KATNAL1Q9BW62 490 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 PPFIA4O75335 1185 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 KCNQ1P51787 676 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 SP2Q02086 613 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 RBL2Q08999 1139 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 TRDNQ13061 729 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 GRB10Q13322 594 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 HIC1Q14526 733 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 PGM5Q15124 567 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 TRIM71Q2Q1W2 868 aaKnown RBP19.58■□□□□ 0.72
CLN3-211ENST00000564091 CELF3Q5SZQ8 465 aaKnown RBP19.58■□□□□ 0.72
CLN3-211ENST00000564091 CNKSR3Q6P9H4 555 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 FCHSD1Q86WN1 690 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 GPKOWQ92917 476 aaPredicted RBP eCLIP19.58■□□□□ 0.72
CLN3-211ENST00000564091 ZBED2Q9BTP6 218 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 MAP3K20Q9NYL2 800 aaKnown RBP19.58■□□□□ 0.72
CLN3-211ENST00000564091 REV3LO60673 3130 aa19.58■□□□□ 0.72
CLN3-211ENST00000564091 GCOM1H8Y6P7 765 aaPredicted RBP19.57■□□□□ 0.72
CLN3-211ENST00000564091 IFIT3O14879 490 aaKnown RBP19.57■□□□□ 0.72
CLN3-211ENST00000564091 GGPS1O95749 300 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 CYP21A2P08686 494 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 POLR2MP0CAP2 368 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 HOXD8P13378 290 aaPredicted RBP19.57■□□□□ 0.72
CLN3-211ENST00000564091 PTH1RQ03431 593 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 PTK7Q13308 1070 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 GRM4Q14833 912 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 ZNF618Q5T7W0 954 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 TRAF7Q6Q0C0 670 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 TAF6LQ9Y6J9 622 aa19.57■□□□□ 0.72
CLN3-211ENST00000564091 CYTH3O43739 400 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 LPXNO60711 386 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 PARNO95453 639 aaKnown RBP19.56■□□□□ 0.72
CLN3-211ENST00000564091 UBA1P22314 1058 aaKnown RBP19.56■□□□□ 0.72
CLN3-211ENST00000564091 MBTPS1Q14703 1052 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 TTC22Q5TAA0 569 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 BCAS3Q9H6U6 928 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 RIOX1Q9H6W3 641 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 NCOR1O75376 2440 aa19.56■□□□□ 0.72
CLN3-211ENST00000564091 PRRC2BQ5JSZ5 2229 aaKnown RBP19.56■□□□□ 0.72
CLN3-211ENST00000564091 BDP1A6H8Y1 2624 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 TRANK1O15050 2925 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 COL9A1P20849 921 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 CCND2P30279 289 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 FAM117BQ6P1L5 589 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 KCNV1Q6PIU1 500 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 PIBF1Q8WXW3 757 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 C16orf70Q9BSU1 422 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 MLXIPQ9HAP2 919 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 MTUS1Q9ULD2 1270 aa19.55■□□□□ 0.72
CLN3-211ENST00000564091 U3KPZ7 1027 aaPredicted RBP19.55■□□□□ 0.72
CLN3-211ENST00000564091 ABHD14A-ACY1A0A1B0GW23 586 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 GJB5O95377 273 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 CHMLP26374 656 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 TROAPQ12815 778 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 IKBKEQ14164 716 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 WTAPQ15007 396 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 AAK1Q2M2I8 961 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 SAMD3Q8N6K7 520 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 RAD9AQ99638 391 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 RAPGEFL1Q9UHV5 662 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 SCN5AQ14524 2016 aa19.54■□□□□ 0.72
CLN3-211ENST00000564091 PNMA6FA0A0J9YX94 578 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 ERICH2A1L162 156 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 E7EWF7 191 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 TGFB3P10600 412 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 THPOP40225 353 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.53■□□□□ 0.72
CLN3-211ENST00000564091 TET1Q8NFU7 2136 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 GDPD5Q8WTR4 605 aa19.53■□□□□ 0.72
CLN3-211ENST00000564091 LGR5O75473 907 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 MRPS9P82933 396 aaKnown RBP19.52■□□□□ 0.72
CLN3-211ENST00000564091 TRAF1Q13077 416 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 RALYLQ86SE5 291 aaKnown RBP19.52■□□□□ 0.72
CLN3-211ENST00000564091 SERINC5Q86VE9 423 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 RUFY2Q8WXA3 655 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 SUGCTQ9HAC7 445 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 RTEL1Q9NZ71 1219 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 COG5Q9UP83 839 aa19.52■□□□□ 0.72
CLN3-211ENST00000564091 C17orf102A2RUQ5 167 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 RSPH10B2B2RC85 870 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 H3BRB1 525 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 LGALS2P05162 132 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 RSPH10BP0C881 870 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 DBF4BQ8NFT6 615 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 NCOA7Q8NI08 942 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 ATP6V0A1Q93050 837 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 HLA-CQ95604 372 aa19.51■□□□□ 0.71
CLN3-211ENST00000564091 TUT1Q9H6E5 874 aaKnown RBP19.51■□□□□ 0.71
CLN3-211ENST00000564091 LINC01553A4QN01 128 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 TREHO43280 583 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 EFCAB14O75071 495 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 SMIM10L2AP0DMW4 78 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 SMIM10L2BP0DMW5 78 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 ANTXR2P58335 489 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 ERVK-21P61565 698 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 SART3Q15020 963 aaKnown RBP19.5■□□□□ 0.71
CLN3-211ENST00000564091 GNPTABQ3T906 1256 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 CATIPQ7Z7H3 387 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 TGS1Q96RS0 853 aaKnown RBP19.5■□□□□ 0.71
CLN3-211ENST00000564091 TELO2Q9Y4R8 837 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms