RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PITPNM1O00562 1244 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 PPFIA4O75335 1185 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 PFKMP08237 780 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 TGFB3P10600 412 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 ATP2A2P16615 1042 aaKnown RBP11.8□□□□□ -0.52
LDLR-214ENST00000560628 UBA1P22314 1058 aaKnown RBP11.8□□□□□ -0.52
LDLR-214ENST00000560628 GNAQP50148 359 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 MRPS9P82933 396 aaKnown RBP11.8□□□□□ -0.52
LDLR-214ENST00000560628 BMP2KLQ5H9B9 411 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 SESTD1Q86VW0 696 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 SMARCC2Q8TAQ2 1214 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 DHX38Q92620 1227 aaKnown RBP11.8□□□□□ -0.52
LDLR-214ENST00000560628 CUL5Q93034 780 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 LZTS2Q9BRK4 669 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 MTA3Q9BTC8 594 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 SLC28A3Q9HAS3 691 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 SEC63Q9UGP8 760 aaKnown RBP11.8□□□□□ -0.52
LDLR-214ENST00000560628 GTF2IRD1Q9UHL9 959 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 SLC12A7Q9Y666 1083 aa11.8□□□□□ -0.52
LDLR-214ENST00000560628 HAS3O00219 553 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 F2P00734 622 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 ACTN1P12814 892 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 IGFBP4P22692 258 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 SMARCA1P28370 1054 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 RFC2P35250 354 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 LIFRP42702 1097 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 HIC1Q14526 733 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 CCDC155Q8N6L0 562 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 USP38Q8NB14 1042 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 FANCBQ8NB91 859 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 TCEANC2Q96MN5 208 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 GAS2L1Q99501 681 aaPredicted RBP11.79□□□□□ -0.52
LDLR-214ENST00000560628 KATNAL1Q9BW62 490 aa11.79□□□□□ -0.52
LDLR-214ENST00000560628 MYO9BQ13459 2157 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 SPATA31C2B4DYI2 1134 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 MEIS2O14770 477 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CALM1P0DP23 149 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CALM2P0DP24 149 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CALM3P0DP25 149 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CKBP12277 381 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 HOXD8P13378 290 aaPredicted RBP11.78□□□□□ -0.52
LDLR-214ENST00000560628 SELPP16109 830 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 SEMA3FQ13275 785 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 ADGRE1Q14246 886 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 GPNMBQ14956 572 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CCDC85BQ15834 202 aaPredicted RBP11.78□□□□□ -0.52
LDLR-214ENST00000560628 GNPTABQ3T906 1256 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 RNF20Q5VTR2 975 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 SYNE3Q6ZMZ3 975 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 LRRC8DQ7L1W4 858 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CYFIP1Q7L576 1253 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 MICU3Q86XE3 530 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 CAGE1Q8TC20 777 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 AFAP1L1Q8TED9 768 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 WNT8BQ93098 351 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 NEK1Q96PY6 1258 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 C16orf70Q9BSU1 422 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 COL25A1Q9BXS0 654 aaPredicted RBP11.78□□□□□ -0.52
LDLR-214ENST00000560628 PSTPIP2Q9H939 334 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 TELO2Q9Y4R8 837 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 PCDHA11Q9Y5I1 949 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 KIAA1217Q5T5P2 1943 aa11.78□□□□□ -0.52
LDLR-214ENST00000560628 SCN5AQ14524 2016 aa11.77□□□□□ -0.52
LDLR-214ENST00000560628 NOP56O00567 594 aaKnown RBP11.77□□□□□ -0.53
LDLR-214ENST00000560628 ICAM3P32942 547 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 SP4Q02446 784 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 PTK7Q13308 1070 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 UBE2SQ16763 222 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 UTP14CQ5TAP6 766 aaKnown RBP11.77□□□□□ -0.53
LDLR-214ENST00000560628 PPP2R2DQ66LE6 453 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 RASEFQ8IZ41 740 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 INPP4AQ96PE3 977 aaPredicted RBP11.77□□□□□ -0.53
LDLR-214ENST00000560628 CERS4Q9HA82 394 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 PRDM6Q9NQX0 595 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 MYH7BA7E2Y1 1941 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 FRMPD4Q14CM0 1322 aa11.77□□□□□ -0.53
LDLR-214ENST00000560628 H3BRB1 525 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 RFXAPO00287 272 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 PIK3CDO00329 1044 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 FIBPO43427 364 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 NBNO60934 754 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 CDC45O75419 566 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 STAM2O75886 525 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 LGALS2P05162 132 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 CA3P07451 260 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 EXOSC10Q01780 885 aaKnown RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 NEDD9Q14511 834 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TCTN1Q2MV58 587 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TRIM71Q2Q1W2 868 aaKnown RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 ADCK5Q3MIX3 580 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 ZNF618Q5T7W0 954 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 PCNX4Q63HM2 1172 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 METTL7BQ6UX53 244 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TMTC3Q6ZXV5 915 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 DHX32Q7L7V1 743 aaKnown RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 HEATR3Q7Z4Q2 680 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TMCO2Q7Z6W1 182 aaPredicted RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 SGMS1Q86VZ5 419 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 HERC6Q8IVU3 1022 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 PHOSPHO2Q8TCD6 241 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms