RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 FIBPO43427 364 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 MSCO60682 206 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 ADAMTS4O75173 837 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 DUSP11O75319 330 aaKnown RBP24.79■■□□□ 1.56
SNX1-210ENST00000560260 ARP10275 920 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 RARBP10826 455 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 UBA1P22314 1058 aaKnown RBP24.79■■□□□ 1.56
SNX1-210ENST00000560260 U2AF2P26368 475 aaKnown RBP eCLIP24.79■■□□□ 1.56
SNX1-210ENST00000560260 GJA8P48165 433 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 BCAS3Q9H6U6 928 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 OGDHLQ9ULD0 1010 aa24.79■■□□□ 1.56
SNX1-210ENST00000560260 VPS37CA5D8V6 355 aaPredicted RBP24.78■■□□□ 1.56
SNX1-210ENST00000560260 CTAGE5O15320 804 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 ATP9AO75110 1047 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 SGPL1O95470 568 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 PGK1P00558 417 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 USP11P51784 963 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 MTMR1Q13613 665 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 LETM2Q2VYF4 491 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 NIPA1Q7RTP0 329 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 NEK8Q86SG6 692 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 TLK2Q86UE8 772 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 NLRX1Q86UT6 975 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 NOSTRINQ8IVI9 506 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 MBOAT7Q96N66 472 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 TMEM106CQ9BVX2 250 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 UPF3AQ9H1J1 476 aaKnown RBP24.78■■□□□ 1.56
SNX1-210ENST00000560260 XPNPEP3Q9NQH7 507 aa24.78■■□□□ 1.56
SNX1-210ENST00000560260 SORBS3O60504 671 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 PDCP20941 246 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 ZNF76P36508 570 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 ARHGAP1Q07960 439 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 KCNH7Q9NS40 1196 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 PKD2L1Q9P0L9 805 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 MTMR6Q9Y217 621 aa24.77■■□□□ 1.56
SNX1-210ENST00000560260 CYP3A7-CYP3A51PA0A087WV96 503 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 CCDC85CA6NKD9 419 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 SLC37A4O43826 429 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 KCNA2P16389 499 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 CYP3A7P24462 503 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 MNX1P50219 401 aaPredicted RBP24.76■■□□□ 1.55
SNX1-210ENST00000560260 SOX10P56693 466 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 PRR16Q569H4 304 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 MCTP1Q6DN14 999 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 PLA2G4DQ86XP0 818 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 UIMC1Q96RL1 719 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 TELO2Q9Y4R8 837 aa24.76■■□□□ 1.55
SNX1-210ENST00000560260 NKRFO15226 690 aaKnown RBP eCLIP24.75■■□□□ 1.55
SNX1-210ENST00000560260 DYNC1LI2O43237 492 aaPredicted RBP24.75■■□□□ 1.55
SNX1-210ENST00000560260 GGPS1O95749 300 aa24.75■■□□□ 1.55
SNX1-210ENST00000560260 GJA9P57773 515 aa24.75■■□□□ 1.55
SNX1-210ENST00000560260 ITGB3BPQ13352 177 aaPredicted RBP24.75■■□□□ 1.55
SNX1-210ENST00000560260 GNL2Q13823 731 aaKnown RBP24.75■■□□□ 1.55
SNX1-210ENST00000560260 KCNV1Q6PIU1 500 aa24.75■■□□□ 1.55
SNX1-210ENST00000560260 MOXD1Q6UVY6 613 aa24.75■■□□□ 1.55
SNX1-210ENST00000560260 OR6J1Q8NGC5 347 aa24.75■■□□□ 1.55
SNX1-210ENST00000560260 AGO4Q9HCK5 861 aaKnown RBP24.75■■□□□ 1.55
SNX1-210ENST00000560260 STX6O43752 255 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 TGFB3P10600 412 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 EN2P19622 333 aaPredicted RBP24.74■■□□□ 1.55
SNX1-210ENST00000560260 NKX3-2P78367 333 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 LRRC41Q15345 812 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 FERMT3Q86UX7 667 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 Q9Y3F1 56 aa24.74■■□□□ 1.55
SNX1-210ENST00000560260 GH1P01241 217 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 BEX3Q00994 111 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 SETQ01105 290 aaPredicted RBP24.73■■□□□ 1.55
SNX1-210ENST00000560260 RESTQ13127 1097 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 PKP1Q13835 747 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 NBR1Q14596 966 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 Q4G0T1 1027 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 CELF3Q5SZQ8 465 aaKnown RBP24.73■■□□□ 1.55
SNX1-210ENST00000560260 KLHDC9Q8NEP7 349 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 CDHR1Q96JP9 859 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 SENP7Q9BQF6 1050 aa24.73■■□□□ 1.55
SNX1-210ENST00000560260 MSH4O15457 936 aa24.72■■□□□ 1.55
SNX1-210ENST00000560260 CCNT1O60563 726 aaKnown RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 FARP2O94887 1054 aaPredicted RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 TFRCP02786 760 aaKnown RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 C6orf222P0C671 652 aaPredicted RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 ATP2B1P20020 1258 aa24.72■■□□□ 1.55
SNX1-210ENST00000560260 TOB1P50616 345 aaPredicted RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 MYSM1Q5VVJ2 828 aa24.72■■□□□ 1.55
SNX1-210ENST00000560260 PPP4R3AQ6IN85 833 aa24.72■■□□□ 1.55
SNX1-210ENST00000560260 CCSAPQ6IQ19 270 aaPredicted RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 GJA10Q969M2 543 aa24.72■■□□□ 1.55
SNX1-210ENST00000560260 DDX25Q9UHL0 483 aaKnown RBP24.72■■□□□ 1.55
SNX1-210ENST00000560260 MAFGO15525 162 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 GCFC2P16383 781 aaKnown RBP24.71■■□□□ 1.55
SNX1-210ENST00000560260 CYFIP1Q7L576 1253 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 POTEDQ86YR6 584 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 DHX37Q8IY37 1157 aaKnown RBP24.71■■□□□ 1.55
SNX1-210ENST00000560260 ETNPPLQ8TBG4 499 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 DIS3LQ8TF46 1054 aaKnown RBP24.71■■□□□ 1.55
SNX1-210ENST00000560260 AFG1LQ8WV93 481 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 EMID1Q96A84 441 aaPredicted RBP24.71■■□□□ 1.55
SNX1-210ENST00000560260 AP5M1Q9H0R1 490 aa24.71■■□□□ 1.55
SNX1-210ENST00000560260 DHX15O43143 795 aaKnown RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 MYCNP04198 464 aaPredicted RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 CST5P28325 142 aaPredicted RBP24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms