RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PRR16Q569H4 304 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 RILPL1Q5EBL4 403 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 RNF180Q86T96 592 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 PLA2G4DQ86XP0 818 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 ANKLE1Q8NAG6 615 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 ARRDC4Q8NCT1 418 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 OR6J1Q8NGC5 347 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 TNFRSF25Q93038 417 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 SENP7Q9BQF6 1050 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 SDF4Q9BRK5 362 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 PDGFCQ9NRA1 345 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 RTEL1Q9NZ71 1219 aa11.44□□□□□ -0.58
USP3-216ENST00000559873 SYNRGQ9UMZ2 1314 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 SPATA31C2B4DYI2 1134 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 KBTBD13C9JR72 458 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 MEIS1O00470 390 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 NOP56O00567 594 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 ADAMTS3O15072 1205 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 ZEB2O60315 1214 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 MARCH6O60337 910 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 CCNT1O60563 726 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 SGPL1O95470 568 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 SMPD1P17405 629 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 LAMC2Q13753 1193 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 Q4G0T1 1027 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 PPP4R3AQ6IN85 833 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 CCDC62Q6P9F0 684 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 DHX37Q8IY37 1157 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 PCSK9Q8NBP7 692 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 SPRYD3Q8NCJ5 442 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 EMID1Q96A84 441 aaPredicted RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 MLXIPQ9HAP2 919 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 KCNH7Q9NS40 1196 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 DDX25Q9UHL0 483 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 DDX41Q9UJV9 622 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 GNEQ9Y223 722 aaKnown RBP11.43□□□□□ -0.58
USP3-216ENST00000559873 KIAA1217Q5T5P2 1943 aa11.43□□□□□ -0.58
USP3-216ENST00000559873 NFASCO94856 1347 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 IGLV3-22A0A075B6J6 115 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 CYP3A7-CYP3A51PA0A087WV96 503 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 FAM86B1E9PN63 330 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 RGS20O76081 388 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 ARIH2O95376 493 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 TDP2O95551 362 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 GGPS1O95749 300 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 TFRCP02786 760 aaKnown RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 FAM86B2P0C5J1 330 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 C6orf222P0C671 652 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 CYP3A7P24462 503 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 CST5P28325 142 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 GJA9P57773 515 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 TTC38Q5R3I4 469 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 METTL7BQ6UX53 244 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 ZFP91Q96JP5 570 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 ZNF577Q9BSK1 485 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 CRISPLD2Q9H0B8 497 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 UPF3AQ9H1J1 476 aaKnown RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 ZSCAN16Q9H4T2 348 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 JPH1Q9HDC5 661 aaPredicted RBP11.42□□□□□ -0.58
USP3-216ENST00000559873 TBC1D22BQ9NU19 505 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 OGDHLQ9ULD0 1010 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 MYH7BA7E2Y1 1941 aa11.42□□□□□ -0.58
USP3-216ENST00000559873 CCDC85CA6NKD9 419 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 KIF28PB7ZC32 967 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 IPO5O00410 1097 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 DNM1LO00429 736 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 TBX3O15119 743 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 DYNC1LI2O43237 492 aaPredicted RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 NEMFO60524 1076 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 GAS7O60861 476 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 ADAMTS4O75173 837 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 BAG4O95429 457 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 MYCNP04198 464 aaPredicted RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 ARHGAP1Q07960 439 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 FSCN1Q16658 493 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 LY6KQ17RY6 165 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 EARS2Q5JPH6 523 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 ANO1Q5XXA6 986 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 LHX8Q68G74 356 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 SLFN12Q8IYM2 578 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 LENG1Q96BZ8 264 aaPredicted RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 MBOAT7Q96N66 472 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 TSEN34Q9BSV6 310 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 AGO4Q9HCK5 861 aaKnown RBP11.41□□□□□ -0.58
USP3-216ENST00000559873 POLR3EQ9NVU0 708 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 PKD2L1Q9P0L9 805 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 MTMR6Q9Y217 621 aa11.41□□□□□ -0.58
USP3-216ENST00000559873 FRMPD3Q5JV73 1810 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 FAM205CA6NFA0 338 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 MOXD2PA6NHM9 499 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 LAD1O00515 517 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 ADCY6O43306 1168 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 KPNA6O60684 536 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 FARP2O94887 1054 aaPredicted RBP11.4□□□□□ -0.58
USP3-216ENST00000559873 BMP15O95972 392 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 PGK1P00558 417 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 KCNA2P16389 499 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 ATP2B1P20020 1258 aa11.4□□□□□ -0.58
USP3-216ENST00000559873 NKX3-2P78367 333 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms