RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MECOMQ03112 1051 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 TNFRSF25Q93038 417 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 ZKSCAN4Q969J2 545 aaPredicted RBP12.46□□□□□ -0.41
LDLR-208ENST00000558518 THOC1Q96FV9 657 aaKnown RBP12.46□□□□□ -0.41
LDLR-208ENST00000558518 SH3GL2Q99962 352 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 SEC63Q9UGP8 760 aaKnown RBP12.46□□□□□ -0.41
LDLR-208ENST00000558518 MYMKA6NI61 221 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 KRT13P13646 458 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 FLT3P36888 993 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 SNCBQ16143 134 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 TBC1D1Q86TI0 1168 aaPredicted RBP12.46□□□□□ -0.42
LDLR-208ENST00000558518 CACNA2D3Q8IZS8 1091 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 TGFBRAP1Q8WUH2 860 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 LUC7LQ9NQ29 371 aaKnown RBP12.46□□□□□ -0.42
LDLR-208ENST00000558518 STK38LQ9Y2H1 464 aa12.46□□□□□ -0.42
LDLR-208ENST00000558518 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.46□□□□□ -0.42
LDLR-208ENST00000558518 EZRP15311 586 aaKnown RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 FGFR2P21802 821 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 FECHP22830 423 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 CCDC38Q502W7 563 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 DYDC1Q8WWB3 177 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 WDR17Q8IZU2 1322 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 CTNND1O60716 968 aaKnown RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 ITGA4P13612 1032 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 NONOQ15233 471 aaKnown RBP eCLIP12.45□□□□□ -0.425e-7■□□□□ 10.7
LDLR-208ENST00000558518 MAN2A1Q16706 1144 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 FAM83BQ5T0W9 1011 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 TRIM51Q9BSJ1 452 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 GPCPD1Q9NPB8 672 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 DCP1AQ9NPI6 582 aaPredicted RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 ARFGEF2Q9Y6D5 1785 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 CHUKO15111 745 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 DDAH1O94760 285 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 HSD17B3P37058 310 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 HERC4Q5GLZ8 1057 aaPredicted RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 RPAINQ86UA6 219 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 CCDC84Q86UT8 332 aaPredicted RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 RETREG2Q8NC44 543 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 NUDT12Q9BQG2 462 aa12.45□□□□□ -0.42
LDLR-208ENST00000558518 CHORDC1Q9UHD1 332 aaPredicted RBP12.45□□□□□ -0.42
LDLR-208ENST00000558518 C4AP0C0L4 1744 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 C4BP0C0L5 1744 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 TDP2O95551 362 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 ZNF211Q13398 564 aaPredicted RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 NEDD9Q14511 834 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 CLEC10AQ8IUN9 316 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 CNPY4Q8N129 248 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 MSL3Q8N5Y2 521 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 DDX12PQ92771 950 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 VEZTQ9HBM0 779 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 ARHGAP23Q9P227 1491 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 GMNCA6NCL1 334 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 CPP00450 1065 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 MYBL1P10243 752 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 PAX7P23759 505 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 ASIC2Q16515 512 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 CALCRLQ16602 461 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 ARL6IP4Q66PJ3 421 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 OTUD6AQ7L8S5 288 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 PRPF38AQ8NAV1 312 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 PIGSQ96S52 555 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 LBHD1Q9BQE6 289 aaPredicted RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 TTYH3Q9C0H2 523 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 DNAJC17Q9NVM6 304 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 PNPLA7Q6ZV29 1317 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 TTI1O43156 1089 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 TRAPPC10P48553 1259 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 ERVK-9P63128 1117 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 TRIM28Q13263 835 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 PPP2R5BQ15173 497 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 UBE2SQ16763 222 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 MAEAQ7L5Y9 396 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 PEX26Q7Z412 305 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 SLC51AQ86UW1 340 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 SLC4A9Q96Q91 983 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 RIOK1Q9BRS2 568 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 KBTBD4Q9NVX7 518 aa12.44□□□□□ -0.42
LDLR-208ENST00000558518 DDX20Q9UHI6 824 aaKnown RBP12.44□□□□□ -0.42
LDLR-208ENST00000558518 CLSTN1O94985 981 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 LRRC14Q15048 493 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 PARP9Q8IXQ6 854 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 LARP4BQ92615 738 aaKnown RBP12.43□□□□□ -0.42
LDLR-208ENST00000558518 PLA2G12BQ9BX93 195 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 PNMA2Q9UL42 364 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 CEP83Q9Y592 693 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 SART1O43290 800 aaKnown RBP12.43□□□□□ -0.42
LDLR-208ENST00000558518 UPP2O95045 317 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 ELF1P32519 619 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 MYO1EQ12965 1108 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 KRT79Q5XKE5 535 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 PDXDC1Q6P996 788 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 U2AF1L4Q8WU68 220 aaKnown RBP12.43□□□□□ -0.42
LDLR-208ENST00000558518 ELAC2Q9BQ52 826 aaKnown RBP12.43□□□□□ -0.42
LDLR-208ENST00000558518 LRRC4CQ9HCJ2 640 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 DNM1LO00429 736 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 PLTPP55058 493 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 CYB5D1Q6P9G0 228 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 GJB7Q6PEY0 223 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 TEX11Q8IYF3 940 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 ARFGAP2Q8N6H7 521 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms