RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 GGPS1O95749 300 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 F2P00734 622 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 TGFB3P10600 412 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 KCNJ6P48051 423 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 CELF3Q5SZQ8 465 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 HERC6Q8IVU3 1022 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 MICALL1Q8N3F8 863 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 IL31RAQ8NI17 732 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 ATXN2LQ8WWM7 1075 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 PIBF1Q8WXW3 757 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 DHX38Q92620 1227 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 MAP4K1Q92918 833 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 SPATA33Q96N06 139 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 TRANK1O15050 2925 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 CKBP12277 381 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 HOXD8P13378 290 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 UBA1P22314 1058 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 ANTXR2P58335 489 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 SP2Q02086 613 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 RBL2Q08999 1139 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 PTK7Q13308 1070 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 HSDL1Q3SXM5 330 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 GNPTABQ3T906 1256 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 MB21D2Q8IYB1 491 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 IGDCC4Q8TDY8 1250 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 ZFP91Q96JP5 570 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 TSPYL2Q9H2G4 693 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 CERS4Q9HA82 394 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 MLXIPQ9HAP2 919 aa12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 RBM8AQ9Y5S9 174 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-213ENST00000557455 REV3LO60673 3130 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 KAT6AQ92794 2004 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 GTPBP6O43824 516 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 TLL1O43897 1013 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 WDR5P61964 334 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 GPNMBQ14956 572 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 CNKSR3Q6P9H4 555 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 CASC1Q6TDU7 716 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 ZNF654Q8IZM8 581 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 CTCFLQ8NI51 663 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 GPKOWQ92917 476 aaPredicted RBP eCLIP12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 ASB2Q96Q27 587 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 MAP3K14Q99558 947 aa12.8□□□□□ -0.36
CCDC88C-213ENST00000557455 MUC3AQ02505 3323 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 RFXAPO00287 272 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 NOP56O00567 594 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 NBNO60934 754 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 STAM2O75886 525 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 DDAH1O94760 285 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 CXCL10P02778 98 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 KIF5BP33176 963 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 MRPS5P82675 430 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 ZNF200P98182 395 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 TAP1Q03518 808 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 ZNF618Q5T7W0 954 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 IL27Q8NEV9 243 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 ARNTL2Q8WYA1 636 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 CUL5Q93034 780 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 RRP36Q96EU6 259 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 MTA3Q9BTC8 594 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 ZBED2Q9BTP6 218 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 MYL10Q9BUA6 226 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 LY9Q9HBG7 655 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 TTC28Q96AY4 2481 aa12.79□□□□□ -0.36
CCDC88C-213ENST00000557455 PRRC2BQ5JSZ5 2229 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 TCF20Q9UGU0 1960 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 XIRP2A4UGR9 3374 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 ABHD14A-ACY1A0A1B0GW23 586 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 CCDC69A6NI79 296 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 H3BRB1 525 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 TNFRSF10AO00220 468 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 LGALS2P05162 132 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 POU3F3P20264 500 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 SMARCA1P28370 1054 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 MCM5P33992 734 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 MRPS9P82933 396 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 IKBKEQ14164 716 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 NEDD9Q14511 834 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 SKIV2LQ15477 1246 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 TRIM71Q2Q1W2 868 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 NFXL1Q6ZNB6 911 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 TMTC2Q8N394 836 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 SMARCC2Q8TAQ2 1214 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 WNT8BQ93098 351 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 LZTS2Q9BRK4 669 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 C16orf70Q9BSU1 422 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 SPZ1Q9BXG8 430 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 TUT1Q9H6E5 874 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 RTEL1Q9NZ71 1219 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 SEC63Q9UGP8 760 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 MTCH2Q9Y6C9 303 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 FRMPD4Q14CM0 1322 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 MICAL3Q7RTP6 2002 aa12.78□□□□□ -0.36
CCDC88C-213ENST00000557455 COL4A4P53420 1690 aaPredicted RBP12.77□□□□□ -0.36
CCDC88C-213ENST00000557455 C17orf102A2RUQ5 167 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 EPOPA6NHQ4 379 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 SPATA31C2B4DYI2 1134 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 FIBPO43427 364 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 PRC1O43663 620 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 EFCAB14O75071 495 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms