RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GJA10Q969M2 543 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 MBOAT7Q96N66 472 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 KCNH7Q9NS40 1196 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 PKD2L1Q9P0L9 805 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 DAXXQ9UER7 740 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-227ENST00000557269 NRBP1Q9UHY1 535 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 DDX41Q9UJV9 622 aaKnown RBP14.58□□□□□ -0.08
SHMT2-227ENST00000557269 TELO2Q9Y4R8 837 aa14.58□□□□□ -0.08
SHMT2-227ENST00000557269 SORBS3O60504 671 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 TXNP10599 105 aaKnown RBP14.57□□□□□ -0.08
SHMT2-227ENST00000557269 CCL5P13501 91 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 ICAM3P32942 547 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 IRX5P78411 483 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-227ENST00000557269 MTMR1Q13613 665 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 ZNF174Q15697 407 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 GPRASP2Q96D09 838 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 AGO4Q9HCK5 861 aaKnown RBP14.57□□□□□ -0.08
SHMT2-227ENST00000557269 HMX1Q9NP08 348 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-227ENST00000557269 FAM184BQ9ULE4 1060 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 PCDHB6Q9Y5E3 794 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 MRVI1Q9Y6F6 885 aa14.57□□□□□ -0.08
SHMT2-227ENST00000557269 KIAA1217Q5T5P2 1943 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 MSH4O15457 936 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 SEPT4O43236 478 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 FIBPO43427 364 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 F13A1P00488 732 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 MCM7P33993 719 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 TNFAIP2Q03169 654 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 GNPTABQ3T906 1256 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 Q4G0T1 1027 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 TTC38Q5R3I4 469 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 MYSM1Q5VVJ2 828 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 LHX8Q68G74 356 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 IQSEC1Q6DN90 963 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 PPP4R3AQ6IN85 833 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 MOXD1Q6UVY6 613 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 NIPA1Q7RTP0 329 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 BRAPQ7Z569 592 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 NLRX1Q86UT6 975 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 SCFD2Q8WU76 684 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 CHAMP1Q96JM3 812 aa14.56□□□□□ -0.08
SHMT2-227ENST00000557269 FTOQ9C0B1 505 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHMT2-227ENST00000557269 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.56□□□□□ -0.084e-7■□□□□ 11.2
SHMT2-227ENST00000557269 DDX25Q9UHL0 483 aaKnown RBP14.56□□□□□ -0.08
SHMT2-227ENST00000557269 GNEQ9Y223 722 aaKnown RBP14.56□□□□□ -0.08
SHMT2-227ENST00000557269 AKR1A1P14550 325 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 KCNA2P16389 499 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 UBA1P22314 1058 aaKnown RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 TRAPPC10P48553 1259 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 ITGB3BPQ13352 177 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 TTLL4Q14679 1199 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 FOXD4L6Q3SYB3 417 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 DUSP28Q4G0W2 176 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 FOXD4L3Q6VB84 417 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 POTEDQ86YR6 584 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 HAS1Q92839 578 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 RNF208Q9H0X6 261 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 TMEM60Q9H2L4 133 aa14.55□□□□□ -0.08
SHMT2-227ENST00000557269 ZSCAN16Q9H4T2 348 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 PAK6Q9NQU5 681 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 DDX20Q9UHI6 824 aaKnown RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 NOL7Q9UMY1 257 aaKnown RBP14.55□□□□□ -0.08
SHMT2-227ENST00000557269 DHX15O43143 795 aaKnown RBP14.54□□□□□ -0.08
SHMT2-227ENST00000557269 PDIA4P13667 645 aaKnown RBP14.54□□□□□ -0.08
SHMT2-227ENST00000557269 GCFC2P16383 781 aaKnown RBP14.54□□□□□ -0.08
SHMT2-227ENST00000557269 RILPL1Q5EBL4 403 aa14.54□□□□□ -0.08
SHMT2-227ENST00000557269 C4orf32Q8N8J7 132 aa14.54□□□□□ -0.08
SHMT2-227ENST00000557269 ETNPPLQ8TBG4 499 aa14.54□□□□□ -0.08
SHMT2-227ENST00000557269 DEFB118Q96PH6 123 aa14.54□□□□□ -0.08
SHMT2-227ENST00000557269 KCNMB3Q9NPA1 279 aa14.54□□□□□ -0.08
SHMT2-227ENST00000557269 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.54□□□□□ -0.08
SHMT2-227ENST00000557269 CENPFP49454 3210 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 MYADML2A6NDP7 307 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 IPO5O00410 1097 aaKnown RBP14.53□□□□□ -0.08
SHMT2-227ENST00000557269 CTAGE5O15320 804 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 MAFGO15525 162 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 DUSP11O75319 330 aaKnown RBP14.53□□□□□ -0.08
SHMT2-227ENST00000557269 GGPS1O95749 300 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 TGFB3P10600 412 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 SETQ01105 290 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-227ENST00000557269 ARHGAP1Q07960 439 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 CELF3Q5SZQ8 465 aaKnown RBP14.53□□□□□ -0.08
SHMT2-227ENST00000557269 KCNV1Q6PIU1 500 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 CYFIP1Q7L576 1253 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 SLC5A5Q92911 643 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 MTMR9Q96QG7 549 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 NAP1L4Q99733 375 aaKnown RBP14.53□□□□□ -0.08
SHMT2-227ENST00000557269 ZNF577Q9BSK1 485 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 CLIC4Q9Y696 253 aa14.53□□□□□ -0.08
SHMT2-227ENST00000557269 SYNRGQ9UMZ2 1314 aa14.52□□□□□ -0.08
SHMT2-227ENST00000557269 DDX39AO00148 427 aaKnown RBP14.52□□□□□ -0.09
SHMT2-227ENST00000557269 DYNC1LI2O43237 492 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-227ENST00000557269 NEMFO60524 1076 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 FARP2O94887 1054 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-227ENST00000557269 PGK1P00558 417 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 RARBP10826 455 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 TLK2Q86UE8 772 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 CDHR1Q96JP9 859 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 USP28Q96RU2 1077 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 SENP7Q9BQF6 1050 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms