RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TTC26A0AVF1 554 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 OPA1O60313 960 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 MYL1P05976 194 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 UBE2SQ16763 222 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 ANKRD40Q6AI12 368 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 APOBEC3HQ6NTF7 200 aaKnown RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 ADGRF4Q8IZF3 695 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 MB21D1Q8N884 522 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 TRIM47Q96LD4 638 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 NUP88Q99567 741 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 HAUS4Q9H6D7 363 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 CAPN7Q9Y6W3 813 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 RASSF10A6NK89 507 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 LGALS16A8MUM7 142 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 H0YHG0 523 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 KRT9P35527 623 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 SLC16A2P36021 539 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 KLK7P49862 253 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 PDE4DQ08499 809 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 ZNF543Q08ER8 600 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 ASPRV1Q53RT3 343 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 PAPD7Q5XG87 772 aaKnown RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 CCDC70Q6NSX1 233 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 COL23A1Q86Y22 540 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 OTUD6BQ8N6M0 293 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 KIAA0895Q8NCT3 520 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 GIMAP7Q8NHV1 300 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 GJA10Q969M2 543 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 SLF1Q9BQI6 1058 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 ZC3H12CQ9C0D7 883 aaKnown RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 THAP9Q9H5L6 903 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 SERPINB13Q9UIV8 391 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 GUCA1BQ9UMX6 200 aa13.55□□□□□ -0.24
SHMT2-207ENST00000553837 REXO2Q9Y3B8 237 aaKnown RBP13.55□□□□□ -0.24
SHMT2-207ENST00000553837 FSBPO95073 299 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 ADCY7P51828 1080 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 ASIC1P78348 528 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 SEMA3FQ13275 785 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 IQCEQ6IPM2 695 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 KRT27Q7Z3Y8 459 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 SH3GL2Q99962 352 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 JPH2Q9BR39 696 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-207ENST00000553837 CUEDC2Q9H467 287 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 DNAJC18Q9H819 358 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 FAM184BQ9ULE4 1060 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 EPN1Q9Y6I3 576 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-207ENST00000553837 COL11A2P13942 1736 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-207ENST00000553837 NRXN2Q9P2S2 1712 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 GRIN2DO15399 1336 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 POTEMA6NI47 508 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 TTC36A6NLP5 189 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 FAM196BA6NMK8 535 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 B4DLN1 442 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 PSMA7O14818 248 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 TTLL1O95922 423 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 RDXP35241 583 aaKnown RBP13.54□□□□□ -0.24
SHMT2-207ENST00000553837 CACNB3P54284 484 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 PPP2R5AQ15172 486 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 CALCRLQ16602 461 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 WDR59Q6PJI9 974 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 KCTD1Q719H9 257 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 TMC4Q7Z404 712 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 KCNK18Q7Z418 384 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 P2RX5Q93086 422 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 DHTKD1Q96HY7 919 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-207ENST00000553837 GDAP1L1Q96MZ0 367 aa13.54□□□□□ -0.24
SHMT2-207ENST00000553837 GREB1LQ9C091 1923 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-207ENST00000553837 MYMKA6NI61 221 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 USP17L10C9JJH3 530 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 CCNE1P24864 410 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 EEF1GP26641 437 aaKnown RBP13.53□□□□□ -0.24
SHMT2-207ENST00000553837 FNTAP49354 379 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 IRX1P78414 480 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-207ENST00000553837 ECM1Q16610 540 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 MICALCLQ6ZW33 695 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 CSGALNACT2Q8N6G5 542 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 EHBP1Q8NDI1 1231 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 SEMA6BQ9H3T3 888 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 MAGEF1Q9HAY2 307 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 EXOC1Q9NV70 894 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 SUGT1Q9Y2Z0 365 aa13.53□□□□□ -0.24
SHMT2-207ENST00000553837 CHUKO15111 745 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 MEFVO15553 781 aaPredicted RBP13.52□□□□□ -0.24
SHMT2-207ENST00000553837 NDUFA10O95299 355 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 EPB41P11171 864 aaKnown RBP13.52□□□□□ -0.24
SHMT2-207ENST00000553837 RXRBP28702 533 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 CLK2P49760 499 aaKnown RBP13.52□□□□□ -0.24
SHMT2-207ENST00000553837 FXR2P51116 673 aaKnown RBP eCLIP13.52□□□□□ -0.24
SHMT2-207ENST00000553837 SKOR1P84550 965 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 AENQ8WTP8 325 aaKnown RBP13.52□□□□□ -0.24
SHMT2-207ENST00000553837 RUBCNQ92622 972 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 DBNDD1Q9H9R9 158 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 SLC39A2Q9NP94 309 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 HDAC6Q9UBN7 1215 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 TRIM10Q9UDY6 481 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 LRWD1Q9UFC0 647 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 TFR2Q9UP52 801 aa13.52□□□□□ -0.24
SHMT2-207ENST00000553837 SIPA1L1O43166 1804 aa13.52□□□□□ -0.25
SHMT2-207ENST00000553837 PNMA6FA0A0J9YX94 578 aa13.52□□□□□ -0.25
SHMT2-207ENST00000553837 hCG_1984214I3L0E3 225 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms