RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	FAM160B2	Q86V87	743 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	HVCN1	Q96D96	273 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	GBP5	Q96PP8	586 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	CCDC68	Q9H2F9	335 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	EMILIN3	Q9NT22	766 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	PREX2	Q70Z35	1606 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	KRT3	P12035	628 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	KCTD2	Q14681	263 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	ALS2CL	Q60I27	953 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	NCAPG2	Q86XI2	1143 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	ZNF579	Q8NAF0	562 aa	Known RBP	12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	CALR3	Q96L12	384 aa	Known RBP	12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	NDUFA10	O95299	355 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	MAP2K2	P36507	400 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	ASPH	Q12797	758 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	PPP2R5C	Q13362	524 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	SYDE2	Q5VT97	1194 aa		12.53	□□□□□ -0.4
SYNE2-208	ENST00000553289	EIF3B	P55884	814 aa	Known RBP	12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	NR5A1	Q13285	461 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	ARHGEF18	Q6ZSZ5	1173 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	ADAT2	Q7Z6V5	191 aa	Known RBP	12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	RASGRP4	Q8TDF6	673 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	DCPS	Q96C86	337 aa	Known RBP	12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	HAUS8	Q9BT25	410 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	PARVG	Q9HBI0	331 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	EPB41L5	Q9HCM4	733 aa		12.52	□□□□□ -0.4
SYNE2-208	ENST00000553289	PNMA6F	A0A0J9YX94	578 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	PTPRE	P23469	700 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	STAT2	P52630	851 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	YWHAG	P61981	247 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	DBN1	Q16643	649 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SGO2	Q562F6	1265 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	DPY19L2	Q6NUT2	758 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	GADL1	Q6ZQY3	521 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SULF1	Q8IWU6	871 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SPTLC3	Q9NUV7	552 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	BSDC1	Q9NW68	430 aa	Predicted RBP	12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	PI4KB	Q9UBF8	816 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	DIS3	Q9Y2L1	958 aa	Known RBP	12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	ENC1	O14682	589 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	CCND2	P30279	289 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	RFX6	Q8HWS3	928 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SERPINB2	P05120	415 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	ORC2	Q13416	577 aa	Predicted RBP	12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	ERFE	Q4G0M1	354 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	RESP18	Q5W5W9	173 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	NME8	Q8N427	588 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	STAG1	Q8WVM7	1258 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SCYL1	Q96KG9	808 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	EFCC1	Q9HA90	598 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	SEC31B	Q9NQW1	1179 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	GCNT4	Q9P109	453 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	RIPOR2	Q9Y4F9	1068 aa		12.52	□□□□□ -0.41
SYNE2-208	ENST00000553289	AP3B2	Q13367	1082 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	KAZN	Q674X7	775 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	CLEC4G	Q6UXB4	293 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	BBS5	Q8N3I7	341 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	NDST4	Q9H3R1	872 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	DISC1	Q9NRI5	854 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SGK1	O00141	431 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLA2G4B	P0C869	781 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLCG1	P19174	1290 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SEMA3F	Q13275	785 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PLCB4	Q15147	1175 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SNCB	Q16143	134 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	TCP11X2	Q5H9J9	407 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	NAA35	Q5VZE5	725 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	NXN	Q6DKJ4	435 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SMYD4	Q8IYR2	804 aa	Predicted RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	TUBB6	Q9BUF5	446 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	MXD3	Q9BW11	206 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SAMSN1	Q9NSI8	373 aa	Known RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	MAD1L1	Q9Y6D9	718 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	ZNF233	A6NK53	670 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PRKAB2	O43741	272 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PCDHB6	Q9Y5E3	794 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	HECW2	Q9P2P5	1572 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	SART1	O43290	800 aa	Known RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	EIF4A3	P38919	411 aa	Known RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	CCDC93	Q567U6	631 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	KCTD1	Q719H9	257 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	CHAMP1	Q96JM3	812 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	FAM193B	Q96PV7	902 aa	Predicted RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	BPIFA3	Q9BQP9	254 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	TRPC5	Q9UL62	973 aa	Predicted RBP	12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	PCDHA13	Q9Y5I0	950 aa		12.51	□□□□□ -0.41
SYNE2-208	ENST00000553289	MCF2L	O15068	1137 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	MXI1	P50539	228 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	PTPRO	Q16827	1216 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	CFAP61	Q8NHU2	1237 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	EXOC4	Q96A65	974 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	ADCY10	Q96PN6	1610 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	TET3	O43151	1660 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	SATB1	Q01826	763 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	CUL1	Q13616	776 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	LRRC41	Q15345	812 aa		12.5	□□□□□ -0.41
SYNE2-208	ENST00000553289	EFCAB13	Q8IY85	973 aa		12.5	□□□□□ -0.41

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