RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ATAD5Q96QE3 1844 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 TARSL2A2RTX5 802 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 TUBBP07437 444 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 MAGEA1P43355 309 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 AARSP49588 968 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 SEMA3FQ13275 785 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 ENOX2Q16206 610 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 NELFCDQ8IXH7 590 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 GUF1Q8N442 669 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 SPATA4Q8NEY3 305 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 TRIM58Q8NG06 486 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 RPGRQ92834 1020 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 HAS1Q92839 578 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 OSBPL9Q96SU4 736 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 TRIM34Q9BYJ4 488 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 JMJD4Q9H9V9 463 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 ZNF287Q9HBT7 754 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 DDX4Q9NQI0 724 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 STK17AQ9UEE5 414 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 JRKLQ9Y4A0 524 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 PVALEFA0A1B0GWK0 134 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ESYT2A0FGR8 921 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 E9PMD0 336 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 MYO1CO00159 1063 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 RIMBP2O15034 1052 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TLR2O60603 784 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 USO1O60763 962 aaKnown RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TACC1O75410 805 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 IL1R1P14778 569 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ARID5AQ03989 594 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 EHHADHQ08426 723 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 COASYQ13057 564 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TMEM266Q2M3C6 531 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 SHROOM1Q2M3G4 852 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 MAP9Q49MG5 647 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 COBLL1Q53SF7 1204 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TRAPPC3LQ5T215 181 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 KRT79Q5XKE5 535 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 HGSNATQ68CP4 663 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 KCTD1Q719H9 257 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 SND1Q7KZF4 910 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 CACNA2D4Q7Z3S7 1137 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 SRLQ86TD4 932 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ADGRF4Q8IZF3 695 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 DNAJC19Q96DA6 116 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 RPGRIP1Q96KN7 1286 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 RABEP2Q9H5N1 569 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 VIPAS39Q9H9C1 493 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 DAGLAQ9Y4D2 1042 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ZSCAN5CA6NGD5 496 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TRAF5O00463 557 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 NOL4O94818 638 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 LCA5LO95447 670 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 NOVP48745 357 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 GTF2IP78347 998 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ASTE1Q2TB18 679 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TMEM119Q4V9L6 283 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TDRD12Q587J7 1177 aaKnown RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 PDXDC1Q6P996 788 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 DNAAF5Q86Y56 855 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 AFAP1L1Q8TED9 768 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 AENQ8WTP8 325 aaKnown RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 NGLY1Q96IV0 654 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 TSGA10Q9BZW7 698 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 EHD4Q9H223 541 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 ACBD3Q9H3P7 528 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 RSPH14Q9UHP6 348 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 GGA1Q9UJY5 639 aa8.3□□□□□ -1.08
LIMA1-213ENST00000552720 PACSIN2Q9UNF0 486 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 RRP15Q9Y3B9 282 aaKnown RBP8.3□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L15C9J2P7 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L10C9JJH3 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L13C9JLJ4 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L11C9JVI0 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L18D6R9N7 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L22D6RA61 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L17D6RBQ6 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L19D6RCP7 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L20D6RJB6 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 C6orf229H3BNL8 230 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 RAD21O60216 631 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 PPP1R2P41236 205 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 NAP1L1P55209 391 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 LRRC63Q05C16 580 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L24Q0WX57 530 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 ZCWPW2Q504Y3 356 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 KLHDC7AQ5VTJ3 777 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 USP17L6PQ6QN14 398 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 FNBP4Q8N3X1 1017 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 TSEN2Q8NCE0 465 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 TBC1D16Q8TBP0 767 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 TLR10Q9BXR5 811 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 POLD4Q9HCU8 107 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 RBM12Q9NTZ6 932 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 DDX25Q9UHL0 483 aaKnown RBP8.29□□□□□ -1.08
LIMA1-213ENST00000552720 GAKO14976 1311 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 POTEB3A0JP26 581 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 GOLGA6BA6NDN3 693 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 FAM196BA6NMK8 535 aa8.29□□□□□ -1.08
LIMA1-213ENST00000552720 POTECB2RU33 542 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms