RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 KATNAL1Q9BW62 490 aa18.84■□□□□ 0.61
VPS29-207ENST00000549970 FRMPD4Q14CM0 1322 aa18.83■□□□□ 0.61
VPS29-207ENST00000549970 TRIP12Q14669 1992 aaPredicted RBP18.83■□□□□ 0.61
VPS29-207ENST00000549970 PITPNM1O00562 1244 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 F2P00734 622 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 TGFB3P10600 412 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 MRPS9P82933 396 aaKnown RBP18.83■□□□□ 0.6
VPS29-207ENST00000549970 MFSD10Q14728 455 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 GRIN2CQ14957 1233 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 KIAA0753Q2KHM9 967 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 HSDL1Q3SXM5 330 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 GNPTABQ3T906 1256 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 SESTD1Q86VW0 696 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 SGMS1Q86VZ5 419 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 RASEFQ8IZ41 740 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 C7orf31Q8N865 590 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 FANCBQ8NB91 859 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 ZNF576Q9H609 170 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 MLXIPQ9HAP2 919 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 RTEL1Q9NZ71 1219 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 HDAC6Q9UBN7 1215 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 TANC1Q9C0D5 1861 aa18.83■□□□□ 0.6
VPS29-207ENST00000549970 MEIS2O14770 477 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 PFKMP08237 780 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 IQCF3P0C7M6 154 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 FOSL2P15408 326 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 ADCK5Q3MIX3 580 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 SYNE3Q6ZMZ3 975 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 TMTC3Q6ZXV5 915 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 GTF2IRD1Q9UHL9 959 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 SLC4A7Q9Y6M7 1214 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 GBF1Q92538 1859 aa18.82■□□□□ 0.6
VPS29-207ENST00000549970 PIK3CDO00329 1044 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 PPFIA4O75335 1185 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 STAM2O75886 525 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 HOXD8P13378 290 aaPredicted RBP18.81■□□□□ 0.6
VPS29-207ENST00000549970 RFC2P35250 354 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 RAB30Q15771 203 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 DHX32Q7L7V1 743 aaKnown RBP18.81■□□□□ 0.6
VPS29-207ENST00000549970 CCDC155Q8N6L0 562 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 MAFAQ8NHW3 353 aaPredicted RBP18.81■□□□□ 0.6
VPS29-207ENST00000549970 CAGE1Q8TC20 777 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 INPP4AQ96PE3 977 aaPredicted RBP18.81■□□□□ 0.6
VPS29-207ENST00000549970 CTAGE1Q96RT6 745 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 BCAS3Q9H6U6 928 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 MSRAQ9UJ68 235 aa18.81■□□□□ 0.6
VPS29-207ENST00000549970 HAS3O00219 553 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 ICAM3P32942 547 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 RABGGTBP53611 331 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 EXOSC10Q01780 885 aaKnown RBP18.8■□□□□ 0.6
VPS29-207ENST00000549970 APOA5Q6Q788 366 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 FTOQ9C0B1 505 aaKnown RBP eCLIP18.8■□□□□ 0.6
VPS29-207ENST00000549970 NKX2-4Q9H2Z4 354 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 PSTPIP2Q9H939 334 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 MYO9BQ13459 2157 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 DOCK5Q9H7D0 1870 aa18.8■□□□□ 0.6
VPS29-207ENST00000549970 TET1Q8NFU7 2136 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 NOP56O00567 594 aaKnown RBP18.79■□□□□ 0.6
VPS29-207ENST00000549970 FIBPO43427 364 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 ACTN1P12814 892 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 SEMA3FQ13275 785 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 KRT32Q14532 448 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 UBE2SQ16763 222 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 TSGA10IPQ3SY00 556 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 PCNX4Q63HM2 1172 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 CYFIP1Q7L576 1253 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 HEATR3Q7Z4Q2 680 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 AFAP1L1Q8TED9 768 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 DHX38Q92620 1227 aaKnown RBP18.79■□□□□ 0.6
VPS29-207ENST00000549970 BRPF3Q9ULD4 1205 aa18.79■□□□□ 0.6
VPS29-207ENST00000549970 YBX2Q9Y2T7 364 aaKnown RBP18.79■□□□□ 0.6
VPS29-207ENST00000549970 CNTNAP5Q8WYK1 1306 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 SPATA31C2B4DYI2 1134 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 ZBTB43O43298 467 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 ATP2A2P16615 1042 aaKnown RBP18.78■□□□□ 0.6
VPS29-207ENST00000549970 ZNF200P98182 395 aaPredicted RBP18.78■□□□□ 0.6
VPS29-207ENST00000549970 NEDD9Q14511 834 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 RTN1Q16799 776 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 C16orf70Q9BSU1 422 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 RBM28Q9NW13 759 aaKnown RBP18.78■□□□□ 0.6
VPS29-207ENST00000549970 CHD9Q3L8U1 2897 aa18.78■□□□□ 0.6
VPS29-207ENST00000549970 KLF18A0A0U1RQI7 1052 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 LGALS2P05162 132 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 MYOGP15173 224 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 SELPP16109 830 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 SP4Q02446 784 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 XRRA1Q6P2D8 792 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 METTL7BQ6UX53 244 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 LRRC8DQ7L1W4 858 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 NLRX1Q86UT6 975 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.77■□□□□ 0.6
VPS29-207ENST00000549970 SLC28A3Q9HAS3 691 aa18.77■□□□□ 0.6
VPS29-207ENST00000549970 NAP1L2Q9ULW6 460 aaPredicted RBP18.77■□□□□ 0.6
VPS29-207ENST00000549970 CHD7Q9P2D1 2997 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 SPDYE3A6NKU9 549 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 GOLGA8AA7E2F4 631 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 GOLGA8BA8MQT2 603 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 H3BRB1 525 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 DLL1O00548 723 aa18.76■□□□□ 0.59
VPS29-207ENST00000549970 CKBP12277 381 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms