RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 MRVI1Q9Y6F6 885 aa13.84□□□□□ -0.19
DDX55-210ENST00000543016 TBX3O15119 743 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 RGS20O76081 388 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 GJB1P08034 283 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 TXNP10599 105 aaKnown RBP13.83□□□□□ -0.2
DDX55-210ENST00000543016 CNGA1P29973 690 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 CCND3P30281 292 aaPredicted RBP13.83□□□□□ -0.2
DDX55-210ENST00000543016 NKX3-2P78367 333 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 PLA2G4DQ86XP0 818 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 EMID1Q96A84 441 aaPredicted RBP13.83□□□□□ -0.2
DDX55-210ENST00000543016 TMEM106CQ9BVX2 250 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 RNF208Q9H0X6 261 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 RTEL1Q9NZ71 1219 aa13.83□□□□□ -0.2
DDX55-210ENST00000543016 DDX41Q9UJV9 622 aaKnown RBP13.83□□□□□ -0.2
DDX55-210ENST00000543016 IGLV3-22A0A075B6J6 115 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 FAM86B1E9PN63 330 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 FAM86B2P0C5J1 330 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 ADCYAP1R1P41586 468 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 NUCB2P80303 420 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 LAMC2Q13753 1193 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 LETM2Q2VYF4 491 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 BRDTQ58F21 947 aaPredicted RBP13.82□□□□□ -0.2
DDX55-210ENST00000543016 COL13A1Q5TAT6 717 aaPredicted RBP13.82□□□□□ -0.2
DDX55-210ENST00000543016 SPRYD3Q8NCJ5 442 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 FAM20AQ96MK3 541 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 AP5M1Q9H0R1 490 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 UNC93B1Q9H1C4 597 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 PDGFCQ9NRA1 345 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 KCNH7Q9NS40 1196 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 TBC1D22BQ9NU19 505 aa13.82□□□□□ -0.2
DDX55-210ENST00000543016 DDX25Q9UHL0 483 aaKnown RBP13.82□□□□□ -0.2
DDX55-210ENST00000543016 GNEQ9Y223 722 aaKnown RBP13.82□□□□□ -0.2
DDX55-210ENST00000543016 KIF28PB7ZC32 967 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 EDIL3O43854 480 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 CCNT1O60563 726 aaKnown RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 BMP15O95972 392 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 GH1P01241 217 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 ZSCAN22P10073 491 aaPredicted RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 SMPD1P17405 629 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 PRR16Q569H4 304 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 EARS2Q5JPH6 523 aaKnown RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 ARRDC4Q8NCT1 418 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 RIT2Q99578 217 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 SDF4Q9BRK5 362 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 UPF3AQ9H1J1 476 aaKnown RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 AGO4Q9HCK5 861 aaKnown RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
DDX55-210ENST00000543016 ATP6V1DQ9Y5K8 247 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 MCM3APO60318 1980 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 NFASCO94856 1347 aa13.81□□□□□ -0.2
DDX55-210ENST00000543016 LAD1O00515 517 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 ZEB2O60315 1214 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 KPNA6O60684 536 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 BAG4O95429 457 aaKnown RBP13.8□□□□□ -0.2
DDX55-210ENST00000543016 SGPL1O95470 568 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 GJA9P57773 515 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 MTFR1Q15390 333 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 TTC38Q5R3I4 469 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 CELF3Q5SZQ8 465 aaKnown RBP13.8□□□□□ -0.2
DDX55-210ENST00000543016 MYSM1Q5VVJ2 828 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 LHX8Q68G74 356 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 ATL3Q6DD88 541 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 METTL7BQ6UX53 244 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 RNF180Q86T96 592 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 SLFN12Q8IYM2 578 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 ANKLE1Q8NAG6 615 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 CYP2W1Q8TAV3 490 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 LENG9Q96B70 501 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 ZNF577Q9BSK1 485 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 CRISPLD2Q9H0B8 497 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 XPNPEP3Q9NQH7 507 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 TCEAL9Q9UHQ7 104 aa13.8□□□□□ -0.2
DDX55-210ENST00000543016 DDX49Q9Y6V7 483 aaKnown RBP13.8□□□□□ -0.2
DDX55-210ENST00000543016 FAM205CA6NFA0 338 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 IPO5O00410 1097 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 TDP2O95551 362 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 BRD1O95696 1058 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 ARP10275 920 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 KCNA2P16389 499 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 UBA1P22314 1058 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 CST5P28325 142 aaPredicted RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 GJA8P48165 433 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 CPT1AP50416 773 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 RESTQ13127 1097 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 SEMA3FQ13275 785 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 TLK2Q86UE8 772 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 DHX37Q8IY37 1157 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 TNS4Q8IZW8 715 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 PCSK9Q8NBP7 692 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 U2AF1L4Q8WU68 220 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 SLC5A5Q92911 643 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 IPO9Q96P70 1041 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 DEFB118Q96PH6 123 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 TSEN34Q9BSV6 310 aaKnown RBP13.79□□□□□ -0.2
DDX55-210ENST00000543016 MLXIPQ9HAP2 919 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 KCNMB3Q9NPA1 279 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 OGDHLQ9ULD0 1010 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 CEP131Q9UPN4 1083 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 MYH7BA7E2Y1 1941 aa13.79□□□□□ -0.2
DDX55-210ENST00000543016 LRRC37A2A6NM11 1700 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms