RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SEC23AQ15436 765 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 TCTN1Q2MV58 587 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 IFIT1BQ5T764 474 aaKnown RBP15.8■□□□□ 0.12
SS18-204ENST00000539244 MYSM1Q5VVJ2 828 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 B4GALNT3Q6L9W6 998 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 DHX37Q8IY37 1157 aaKnown RBP15.8■□□□□ 0.12
SS18-204ENST00000539244 HLA-CQ95604 372 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 RAD9AQ99638 391 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 UBAC1Q9BSL1 405 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 C1QTNF1Q9BXJ1 281 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 VAT1LQ9HCJ6 419 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 BRWD1Q9NSI6 2320 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 SIP14410 1827 aa15.8■□□□□ 0.12
SS18-204ENST00000539244 ZBTB5O15062 677 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 PPP1R11O60927 126 aaPredicted RBP15.79■□□□□ 0.12
SS18-204ENST00000539244 ZNF286BP0CG31 522 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 TGFB3P10600 412 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 MKRN4PQ13434 485 aaPredicted RBP15.79■□□□□ 0.12
SS18-204ENST00000539244 CELF3Q5SZQ8 465 aaKnown RBP15.79■□□□□ 0.12
SS18-204ENST00000539244 WNT8BQ93098 351 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 ALG1Q9BT22 464 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 ZBED2Q9BTP6 218 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 MAD2L2Q9UI95 211 aa15.79■□□□□ 0.12
SS18-204ENST00000539244 PALM3A6NDB9 673 aaPredicted RBP15.78■□□□□ 0.12
SS18-204ENST00000539244 KLRF2D3W0D1 207 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 IGHDP01880 384 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 HOXC8P31273 242 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 ERVK-21P61565 698 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 IKBKEQ14164 716 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 HIC1Q14526 733 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 MBTPS1Q14703 1052 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 PGM5Q15124 567 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 HSDL1Q3SXM5 330 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 ZNF618Q5T7W0 954 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 TMCO2Q7Z6W1 182 aaPredicted RBP15.78■□□□□ 0.12
SS18-204ENST00000539244 VSIG10LQ86VR7 867 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 SUGCTQ9HAC7 445 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 RAPGEFL1Q9UHV5 662 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 PCDHA1Q9Y5I3 950 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 MICAL3Q7RTP6 2002 aa15.78■□□□□ 0.12
SS18-204ENST00000539244 EMSYQ7Z589 1322 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 LINC01553A4QN01 128 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 LGR5O75473 907 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 ZNF200P98182 395 aaPredicted RBP15.77■□□□□ 0.12
SS18-204ENST00000539244 TRAF1Q13077 416 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 SERINC5Q86VE9 423 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 GDPD5Q8WTR4 605 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 SPATA33Q96N06 139 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 TGS1Q96RS0 853 aaKnown RBP15.77■□□□□ 0.12
SS18-204ENST00000539244 C16orf70Q9BSU1 422 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 IL25Q9H293 177 aa15.77■□□□□ 0.12
SS18-204ENST00000539244 GGPS1O95749 300 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 MYCLP12524 364 aaPredicted RBP15.76■□□□□ 0.11
SS18-204ENST00000539244 UBA1P22314 1058 aaKnown RBP15.76■□□□□ 0.11
SS18-204ENST00000539244 HOXA13P31271 388 aaPredicted RBP15.76■□□□□ 0.11
SS18-204ENST00000539244 SP2Q02086 613 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 SLC35G1Q2M3R5 365 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 CYB5R4Q7L1T6 521 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 IL31RAQ8NI17 732 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 RIOX1Q9H6W3 641 aa15.76■□□□□ 0.11
SS18-204ENST00000539244 BAZ2BQ9UIF8 2168 aaKnown RBP15.75■□□□□ 0.11
SS18-204ENST00000539244 CCND2P30279 289 aa15.75■□□□□ 0.11
SS18-204ENST00000539244 HTRA4P83105 476 aaPredicted RBP15.75■□□□□ 0.11
SS18-204ENST00000539244 GRM4Q14833 912 aa15.75■□□□□ 0.11
SS18-204ENST00000539244 INSL6Q9Y581 213 aa15.75■□□□□ 0.11
SS18-204ENST00000539244 FRMPD4Q14CM0 1322 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 COL4A6Q14031 1691 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.74■□□□□ 0.11
SS18-204ENST00000539244 RSPH10B2B2RC85 870 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 GCOM1H8Y6P7 765 aaPredicted RBP15.74■□□□□ 0.11
SS18-204ENST00000539244 CAND2O75155 1236 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 RSPH10BP0C881 870 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 POLR2MP0CAP2 368 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 PLA2G5P39877 138 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 PLEKHG4Q58EX7 1191 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.74■□□□□ 0.11
SS18-204ENST00000539244 DBF4BQ8NFT6 615 aa15.74■□□□□ 0.11
SS18-204ENST00000539244 SP7Q8TDD2 431 aaPredicted RBP15.74■□□□□ 0.11
SS18-204ENST00000539244 C17orf102A2RUQ5 167 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 H3BRB1 525 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 CYTH3O43739 400 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 STAM2O75886 525 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 AMHP03971 560 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 ICAM3P32942 547 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 THPOP40225 353 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 TROAPQ12815 778 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 TRDNQ13061 729 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 HOMER1Q86YM7 354 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 GPKOWQ92917 476 aaPredicted RBP eCLIP15.73■□□□□ 0.11
SS18-204ENST00000539244 INPP4AQ96PE3 977 aaPredicted RBP15.73■□□□□ 0.11
SS18-204ENST00000539244 PIGSQ96S52 555 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 EPHX3Q9H6B9 360 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 TUT1Q9H6E5 874 aaKnown RBP15.73■□□□□ 0.11
SS18-204ENST00000539244 MLXIPQ9HAP2 919 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 MTUS1Q9ULD2 1270 aa15.73■□□□□ 0.11
SS18-204ENST00000539244 ARIH1Q9Y4X5 557 aaPredicted RBP15.73■□□□□ 0.11
SS18-204ENST00000539244 PNMA6FA0A0J9YX94 578 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 LGALS2P05162 132 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 SMIM10L2AP0DMW4 78 aa15.72■□□□□ 0.11
SS18-204ENST00000539244 SMIM10L2BP0DMW5 78 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms