RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 GLI4P10075 376 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 PAMP19021 973 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 HOXC12P31275 282 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 RBL2Q08999 1139 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 SCRN1Q12765 414 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 DPY19L1Q2PZI1 675 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 E4F1Q66K89 784 aaPredicted RBP5.41□□□□□ -1.54
USP48-215ENST00000534705 SREK1Q8WXA9 508 aaKnown RBP5.41□□□□□ -1.54
USP48-215ENST00000534705 PEX11GQ96HA9 241 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 NOX5Q96PH1 765 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 MMP19Q99542 508 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 ZNF747Q9BV97 191 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 VPS11Q9H270 941 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 SIRPGQ9P1W8 387 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 SMARCA4P51532 1647 aa5.41□□□□□ -1.54
USP48-215ENST00000534705 IQCA1LA6NCM1 817 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 U2SURPO15042 1029 aaKnown RBP5.4□□□□□ -1.54
USP48-215ENST00000534705 TACR1P25103 407 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 SERINC3Q13530 473 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 ACBD5Q5T8D3 534 aaPredicted RBP5.4□□□□□ -1.54
USP48-215ENST00000534705 SOGA3Q5TF21 947 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 LRP10Q7Z4F1 713 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 NPLOC4Q8TAT6 608 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 BTN2A2Q8WVV5 523 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 PPP1R14AQ96A00 147 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 PCED1AQ9H1Q7 454 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 LRP2BPQ9P2M1 347 aa5.4□□□□□ -1.54
USP48-215ENST00000534705 NPHP3-ACAD11A0A0J9YXS1 232 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 CPP00450 1065 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 RPL13P26373 211 aaKnown RBP5.39□□□□□ -1.55
USP48-215ENST00000534705 GFRA1P56159 465 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 CYP4F3Q08477 520 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 RASGRF1Q13972 1273 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 IQCEQ6IPM2 695 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 NETO2Q8NC67 525 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 CCDC113Q9H0I3 377 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 ST7Q9NRC1 585 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 CECR2Q9BXF3 1484 aa5.39□□□□□ -1.55
USP48-215ENST00000534705 TBX1O43435 398 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 NPHS1O60500 1241 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 THBDP07204 575 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 CYP2C8P10632 490 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 GTF2F1P35269 517 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP48-215ENST00000534705 MAP4K2Q12851 820 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 KCNAB2Q13303 367 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 SMAD4Q13485 552 aaKnown RBP5.38□□□□□ -1.55
USP48-215ENST00000534705 CDSNQ15517 529 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 LIMS2Q7Z4I7 341 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 NPM2Q86SE8 214 aaKnown RBP5.38□□□□□ -1.55
USP48-215ENST00000534705 LRRC47Q8N1G4 583 aaKnown RBP5.38□□□□□ -1.55
USP48-215ENST00000534705 FRS2Q8WU20 508 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 KLC2Q9H0B6 622 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 CLEC1BQ9P126 229 aa5.38□□□□□ -1.55
USP48-215ENST00000534705 A0A1W2PQU0 124 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 PDPK1O15530 556 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 SNRPB2P08579 225 aaKnown RBP5.37□□□□□ -1.55
USP48-215ENST00000534705 FGFR1P11362 822 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 PLS3P13797 630 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 PPP2R2AP63151 447 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 HSP90AA2PQ14568 343 aaPredicted RBP5.37□□□□□ -1.55
USP48-215ENST00000534705 PLEKHH3Q7Z736 793 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 Q8N1Y9 231 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 KREMEN2Q8NCW0 462 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 MKL1Q969V6 931 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 C1orf159Q96HA4 380 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 MTA3Q9BTC8 594 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 LGR4Q9BXB1 951 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 BCAS3Q9H6U6 928 aa5.37□□□□□ -1.55
USP48-215ENST00000534705 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP48-215ENST00000534705 MEFVO15553 781 aaPredicted RBP5.36□□□□□ -1.55
USP48-215ENST00000534705 LAMTOR5O43504 91 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 AMHP03971 560 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 THBS2P35442 1172 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 SLC35F1Q5T1Q4 408 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 LZTR1Q8N653 840 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 TTLL6Q8N841 843 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 KYQ8NBH2 561 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 KCTD13Q8WZ19 329 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 DDX11Q96FC9 970 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 LCORQ96JN0 433 aaPredicted RBP5.36□□□□□ -1.55
USP48-215ENST00000534705 AARSD1Q9BTE6 412 aaKnown RBP5.36□□□□□ -1.55
USP48-215ENST00000534705 SEMA4AQ9H3S1 761 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 GPRC5CQ9NQ84 441 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 HS3ST3A1Q9Y663 406 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 PEG3Q9GZU2 1588 aa5.36□□□□□ -1.55
USP48-215ENST00000534705 C7orf72A4D263 438 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 NPEPPSL1A6NEC2 478 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 GTF2A2P52657 109 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 PURAQ00577 322 aaKnown RBP5.35□□□□□ -1.55
USP48-215ENST00000534705 RASA3Q14644 834 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 MBLAC2Q68D91 279 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 TXNDC5Q8NBS9 432 aaKnown RBP5.35□□□□□ -1.55
USP48-215ENST00000534705 TMEM145Q8NBT3 493 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 C11orf84Q9BUA3 381 aaPredicted RBP5.35□□□□□ -1.55
USP48-215ENST00000534705 DEF6Q9H4E7 631 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 RXFP1Q9HBX9 757 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 ARHGEF4Q9NR80 690 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 PPP1R1BQ9UD71 204 aaPredicted RBP5.35□□□□□ -1.55
USP48-215ENST00000534705 NPFFR2Q9Y5X5 522 aa5.35□□□□□ -1.55
USP48-215ENST00000534705 BAZ1AQ9NRL2 1556 aaPredicted RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms