RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PTPN21Q16825 1174 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 BRDTQ58F21 947 aaPredicted RBP7.75□□□□□ -1.17
CD44-237ENST00000534082 TMEM105Q8N8V8 129 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 MSLNLQ96KJ4 702 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 WDR11Q9BZH6 1224 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 ANTXR1Q9H6X2 564 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 INCENPQ9NQS7 918 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 TLR7Q9NYK1 1049 aaKnown RBP7.75□□□□□ -1.17
CD44-237ENST00000534082 DBNLQ9UJU6 430 aaKnown RBP7.75□□□□□ -1.17
CD44-237ENST00000534082 CEP250Q9BV73 2442 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 RAD50Q92878 1312 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 MAP1BP46821 2468 aaKnown RBP7.74□□□□□ -1.17
CD44-237ENST00000534082 USP24Q9UPU5 2620 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 CYP2D7A0A087X1C5 515 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 RCCD1A6NED2 376 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 F5H6K3 240 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 KPNA6O60684 536 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 CSPG5O95196 566 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 CKBP12277 381 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 ICAM3P32942 547 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 CTNNB1P35222 781 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 KLRC3Q07444 240 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 PUM1Q14671 1186 aaKnown RBP eCLIP7.74□□□□□ -1.17
CD44-237ENST00000534082 MBTPS1Q14703 1052 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 GDF6Q6KF10 455 aaPredicted RBP7.74□□□□□ -1.17
CD44-237ENST00000534082 C16orf86Q6ZW13 317 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 LCORLQ8N3X6 602 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 SMRP1Q8NCR6 262 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 ZNF516Q92618 1163 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 RPGRIP1Q96KN7 1286 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 RIPOR3Q96MK2 946 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 IRX2Q9BZI1 471 aaPredicted RBP7.74□□□□□ -1.17
CD44-237ENST00000534082 LMAN2LQ9H0V9 348 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 IGFLR1Q9H665 355 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 SMC4Q9NTJ3 1288 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 USP15Q9Y4E8 981 aaPredicted RBP7.74□□□□□ -1.17
CD44-237ENST00000534082 MICAL3Q7RTP6 2002 aa7.74□□□□□ -1.17
CD44-237ENST00000534082 RALGAPA2Q2PPJ7 1873 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 NLRC5Q86WI3 1866 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 PNMA6EA0A0J9YXQ4 647 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 A6NJR5 290 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 GRM6O15303 877 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 LGR5O75473 907 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 GNAI3P08754 354 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 RRP1P56182 461 aaKnown RBP7.73□□□□□ -1.17
CD44-237ENST00000534082 ADAM15Q13444 863 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 ST3GAL2Q16842 350 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 TRAF7Q6Q0C0 670 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 SESTD1Q86VW0 696 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 MORC4Q8TE76 937 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 C11orf84Q9BUA3 381 aaPredicted RBP7.73□□□□□ -1.17
CD44-237ENST00000534082 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.73□□□□□ -1.17
CD44-237ENST00000534082 PHF7Q9BWX1 381 aaPredicted RBP7.73□□□□□ -1.17
CD44-237ENST00000534082 CYP39A1Q9NYL5 469 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 FEM1BQ9UK73 627 aa7.73□□□□□ -1.17
CD44-237ENST00000534082 GREB1LQ9C091 1923 aaPredicted RBP7.73□□□□□ -1.17
CD44-237ENST00000534082 TRIP12Q14669 1992 aaPredicted RBP7.73□□□□□ -1.17
CD44-237ENST00000534082 LCTP09848 1927 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 RBM47A0AV96 593 aaKnown RBP7.72□□□□□ -1.17
CD44-237ENST00000534082 ALAS1P13196 640 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 PDE6AP16499 860 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 COASYQ13057 564 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 OS9Q13438 667 aaPredicted RBP7.72□□□□□ -1.17
CD44-237ENST00000534082 COL9A2Q14055 689 aaPredicted RBP7.72□□□□□ -1.17
CD44-237ENST00000534082 PPP2R5BQ15173 497 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 TKFCQ3LXA3 575 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 ALDH1L2Q3SY69 923 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 C12orf60Q5U649 245 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 ZBTB33Q86T24 672 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 AMOTL1Q8IY63 956 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 KIAA2013Q8IYS2 634 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 TRERF1Q96PN7 1200 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 PURBQ96QR8 312 aaKnown RBP7.72□□□□□ -1.17
CD44-237ENST00000534082 ARMT1Q9H993 441 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 CLEC1BQ9P126 229 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 SPTBN2O15020 2390 aa7.72□□□□□ -1.17
CD44-237ENST00000534082 C5orf67F2Z3F1 127 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 NKRFO15226 690 aaKnown RBP eCLIP7.71□□□□□ -1.18
CD44-237ENST00000534082 PRKAB2O43741 272 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 UPP2O95045 317 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 MMP1P03956 469 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 RB1P06400 928 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 FDX1P10109 184 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 ALDH5A1P51649 535 aaPredicted RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 TRIM71Q2Q1W2 868 aaKnown RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 MUM1L1Q5H9M0 696 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 ZNF618Q5T7W0 954 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 SLC9C2Q5TAH2 1124 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 NSMFQ6X4W1 530 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 LRRC47Q8N1G4 583 aaKnown RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 DBF4BQ8NFT6 615 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 COPS5Q92905 334 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 WNT8BQ93098 351 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 PPP2R3CQ969Q6 453 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 IFIH1Q9BYX4 1025 aaKnown RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 API5Q9BZZ5 524 aaKnown RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 CCDC8Q9H0W5 538 aaPredicted RBP7.71□□□□□ -1.18
CD44-237ENST00000534082 TMEM134Q9H6X4 195 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 ATP8A2Q9NTI2 1148 aa7.71□□□□□ -1.18
CD44-237ENST00000534082 DLL3Q9NYJ7 618 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms