RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PDIA3P30101 505 aaKnown RBP13.21□□□□□ -0.29
VCAN-212ENST00000515397 FPGSQ05932 587 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 STK3Q13188 491 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 LAMC2Q13753 1193 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 CELF3Q5SZQ8 465 aaKnown RBP13.21□□□□□ -0.29
VCAN-212ENST00000515397 MYSM1Q5VVJ2 828 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 C16orf59Q7L2K0 433 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 CYFIP1Q7L576 1253 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 SPATA33Q96N06 139 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 UIMC1Q96RL1 719 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 HIPK3Q9H422 1215 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 MLXIPQ9HAP2 919 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 CYP46A1Q9Y6A2 500 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 SMCO2A6NFE2 343 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 SPATA31C2B4DYI2 1134 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 ZNF200P98182 395 aaPredicted RBP13.2□□□□□ -0.3
VCAN-212ENST00000515397 DGKDQ16760 1214 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 MFSD5Q6N075 450 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 CYP2W1Q8TAV3 490 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 SCLYQ96I15 445 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 NOC4LQ9BVI4 516 aaKnown RBP13.2□□□□□ -0.3
VCAN-212ENST00000515397 AGXT2Q9BYV1 514 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 PDRG1Q9NUG6 133 aa13.2□□□□□ -0.3
VCAN-212ENST00000515397 FRMPD4Q14CM0 1322 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 SPDYE3A6NKU9 549 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 KPNA6O60684 536 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 ATP9AO75110 1047 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 ITGB5P18084 799 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 PSEN2P49810 448 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 NTRK3Q16288 839 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 PKN1Q16512 942 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 LRIT3Q3SXY7 679 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 JAKMIP3Q5VZ66 844 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 PCNX4Q63HM2 1172 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 GDF6Q6KF10 455 aaPredicted RBP13.19□□□□□ -0.3
VCAN-212ENST00000515397 PPTC7Q8NI37 304 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 INPP4AQ96PE3 977 aaPredicted RBP13.19□□□□□ -0.3
VCAN-212ENST00000515397 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.19□□□□□ -0.3
VCAN-212ENST00000515397 SLC26A6Q9BXS9 759 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 RIC8AQ9NPQ8 531 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 BARHL2Q9NY43 387 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 HDAC6Q9UBN7 1215 aa13.19□□□□□ -0.3
VCAN-212ENST00000515397 CCDC196A0A1B0GTZ2 297 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 TGFB3P10600 412 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 SCG2P13521 617 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 ADCY7P51828 1080 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 HIC1Q14526 733 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
VCAN-212ENST00000515397 KIAA0753Q2KHM9 967 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 TMEM240Q5SV17 173 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 UTP14CQ5TAP6 766 aaKnown RBP13.18□□□□□ -0.3
VCAN-212ENST00000515397 ZNF365Q70YC5 407 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 EMID1Q96A84 441 aaPredicted RBP13.18□□□□□ -0.3
VCAN-212ENST00000515397 RNPC3Q96LT9 517 aaKnown RBP13.18□□□□□ -0.3
VCAN-212ENST00000515397 FAM161BQ96MY7 647 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 WNT8AQ9H1J5 351 aa13.18□□□□□ -0.3
VCAN-212ENST00000515397 KIAA1217Q5T5P2 1943 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 LAMA2P24043 3122 aaKnown RBP13.17□□□□□ -0.3
VCAN-212ENST00000515397 PRPF3O43395 683 aaKnown RBP13.17□□□□□ -0.3
VCAN-212ENST00000515397 FIBPO43427 364 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 PPFIA4O75335 1185 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 ICAM3P32942 547 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 MFSD10Q14728 455 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 PTGISQ16647 500 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 GNPTABQ3T906 1256 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 FAM109BQ6ICB4 259 aaPredicted RBP13.17□□□□□ -0.3
VCAN-212ENST00000515397 NFRKBQ6P4R8 1299 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 KCNV1Q6PIU1 500 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 DEFB128Q7Z7B8 93 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 NLRX1Q86UT6 975 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 TRIM50Q86XT4 487 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 FBXL16Q8N461 479 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 TMEM199Q8N511 208 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 RASGRP4Q8TDF6 673 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 CTAGE1Q96RT6 745 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 TM6SF1Q9BZW5 370 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 VPS54Q9P1Q0 977 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 NOD1Q9Y239 953 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 UBIAD1Q9Y5Z9 338 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 LTBP2Q14767 1821 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 MYH7BA7E2Y1 1941 aa13.17□□□□□ -0.3
VCAN-212ENST00000515397 GRXCR1A8MXD5 290 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 NOP56O00567 594 aaKnown RBP13.16□□□□□ -0.3
VCAN-212ENST00000515397 EPB41L2O43491 1005 aaKnown RBP13.16□□□□□ -0.3
VCAN-212ENST00000515397 SUPT20HL2P0C7V6 817 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 ARP10275 920 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 RCAN1P53805 252 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 EVCP57679 992 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 AKAP17AQ02040 695 aaKnown RBP13.16□□□□□ -0.3
VCAN-212ENST00000515397 PPIGQ13427 754 aaKnown RBP eCLIP13.16□□□□□ -0.3
VCAN-212ENST00000515397 NEDD9Q14511 834 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 OTOP2Q7RTS6 562 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 DEFB123Q8N688 67 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 C7orf31Q8N865 590 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 VWCEQ96DN2 955 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 GPR20Q99678 358 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 C16orf70Q9BSU1 422 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 ANO3Q9BYT9 981 aa13.16□□□□□ -0.3
VCAN-212ENST00000515397 SCN10AQ9Y5Y9 1956 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 HAS3O00219 553 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms