RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 CERS4Q9HA82 394 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 MAP3K20Q9NYL2 800 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 PRUNE2Q8WUY3 3088 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 ERICH2A1L162 156 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 ZBBXA8MT70 800 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 SH2B2O14492 632 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 MEIS2O14770 477 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 GGPS1O95749 300 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 ATP2A2P16615 1042 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 UBA1P22314 1058 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 MFSD10Q14728 455 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 CCDC85BQ15834 202 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 KIAA0753Q2KHM9 967 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 CATIPQ7Z7H3 387 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 RASEFQ8IZ41 740 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 PPTC7Q8NI37 304 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 TCEANC2Q96MN5 208 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 SPATA33Q96N06 139 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 GTF2IRD1Q9UHL9 959 aa12.94□□□□□ -0.34
LIMCH1-214ENST00000512228 SPATA31C2B4DYI2 1134 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 PITPNM1O00562 1244 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 PPFIA4O75335 1185 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 F2P00734 622 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 CKBP12277 381 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 KRT40Q6A162 431 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 CCDC82Q8N4S0 544 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 RETREG2Q8NC44 543 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 FTOQ9C0B1 505 aaKnown RBP eCLIP12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 SLC28A3Q9HAS3 691 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 MSRAQ9UJ68 235 aa12.93□□□□□ -0.34
LIMCH1-214ENST00000512228 FRMPD4Q14CM0 1322 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 A0A0C4DFX4 3053 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 ATP9AO75110 1047 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 CA3P07451 260 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 CCND2P30279 289 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 RAB30Q15771 203 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 ADCK5Q3MIX3 580 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 ZNF618Q5T7W0 954 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 SAMD3Q8N6K7 520 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 C7orf31Q8N865 590 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 MAP3K14Q99558 947 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 SPZ1Q9BXG8 430 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 BRPF3Q9ULD4 1205 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 PCDHA11Q9Y5I1 949 aa12.92□□□□□ -0.34
LIMCH1-214ENST00000512228 TCF20Q9UGU0 1960 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 LCHNA4D1U4 455 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 ADAMTS3O15072 1205 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 DDAH1O94760 285 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 TGFB3P10600 412 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 SELPP16109 830 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 IGFBP4P22692 258 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 SMARCA1P28370 1054 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 ICAM3P32942 547 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 MCM5P33992 734 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 RFC2P35250 354 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 DEFB103AP81534 67 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 EXOSC10Q01780 885 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 TAP1Q03518 808 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 BFSP2Q13515 415 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 SART3Q15020 963 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 TYW1BQ6NUM6 668 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 LRRC8DQ7L1W4 858 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 CYFIP1Q7L576 1253 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 HERC6Q8IVU3 1022 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 FANCBQ8NB91 859 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 INPP4AQ96PE3 977 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 RNPEPQ9H4A4 650 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 MLXIPQ9HAP2 919 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 ANO2Q9NQ90 1003 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 NOD1Q9Y239 953 aa12.91□□□□□ -0.34
LIMCH1-214ENST00000512228 PRRC2BQ5JSZ5 2229 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 PIK3CDO00329 1044 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 TREHO43280 583 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 CXCL10P02778 98 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 PFKMP08237 780 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 ITGB5P18084 799 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 LIFRP42702 1097 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 RBL2Q08999 1139 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 FUT2Q10981 343 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 UBE2SQ16763 222 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 PPP2R2DQ66LE6 453 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 NFXL1Q6ZNB6 911 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 TRIM50Q86XT4 487 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 CTCFLQ8NI51 663 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 AFAP1L1Q8TED9 768 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 RRP36Q96EU6 259 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 TMEM87BQ96K49 555 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 GPR20Q99678 358 aa12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 MTIF3Q9H2K0 278 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 FAM217BQ9NTX9 383 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-214ENST00000512228 H3BRB1 525 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 LGALS2P05162 132 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 SMIM10L2AP0DMW4 78 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 SMIM10L2BP0DMW5 78 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 CPA1P15085 419 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 HOXC8P31273 242 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 WDR5P61964 334 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 PTK7Q13308 1070 aa12.89□□□□□ -0.35
LIMCH1-214ENST00000512228 MKRN4PQ13434 485 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms