RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF652Q9Y2D9 606 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 X6R8D5 127 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 OVOL3O00110 214 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 SCAMP3O14828 347 aaKnown RBP4.99□□□□□ -1.61
NUP54-208ENST00000508604 KCNAB2Q13303 367 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 NCAPHQ15003 741 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 PALM2Q8IXS6 379 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 KBTBD2Q8IY47 623 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 RASGRP4Q8TDF6 673 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 ZSWIM3Q96MP5 696 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 YTHDC1Q96MU7 727 aaKnown RBP4.99□□□□□ -1.61
NUP54-208ENST00000508604 TMEM209Q96SK2 561 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 SLITRK6Q9H5Y7 841 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 DTLQ9NZJ0 730 aa4.99□□□□□ -1.61
NUP54-208ENST00000508604 MUSKO15146 869 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 MEFVO15553 781 aaPredicted RBP4.98□□□□□ -1.61
NUP54-208ENST00000508604 MAFKO60675 156 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 ACVRL1P37023 503 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 BCL6P41182 706 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 SELENOPP49908 381 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 EPHB4P54760 987 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 SLFN13Q68D06 897 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 KLHL36Q8N4N3 616 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 ZNF513Q8N8E2 541 aaPredicted RBP4.98□□□□□ -1.61
NUP54-208ENST00000508604 FRS2Q8WU20 508 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 MENTQ9BUN1 341 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 ZNF747Q9BV97 191 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 LRP2BPQ9P2M1 347 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 ZDHHC9Q9Y397 364 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 PCDHB4Q9Y5E5 795 aa4.98□□□□□ -1.61
NUP54-208ENST00000508604 B4GALT4O60513 344 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 AMHP03971 560 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 HOXC12P31275 282 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 NASPP49321 788 aaPredicted RBP4.97□□□□□ -1.61
NUP54-208ENST00000508604 HS1BP3Q53T59 392 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 STEAP3Q658P3 488 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 TRMT10BQ6PF06 316 aaKnown RBP4.97□□□□□ -1.61
NUP54-208ENST00000508604 IGDCC4Q8TDY8 1250 aa4.97□□□□□ -1.61
NUP54-208ENST00000508604 H7BY64 318 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 GPR42O15529 346 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 CPP00450 1065 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 SLPIP03973 132 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 SNRPB2P08579 225 aaKnown RBP4.96□□□□□ -1.61
NUP54-208ENST00000508604 ECI1P42126 302 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 CDSNQ15517 529 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 PKN3Q6P5Z2 889 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 Q8N1X5 172 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 Q8N1Y9 231 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 NPLOC4Q8TAT6 608 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 SHDQ96IW2 340 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 CD248Q9HCU0 757 aa4.96□□□□□ -1.61
NUP54-208ENST00000508604 DGKIO75912 1065 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 NFATC3Q12968 1075 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 LSAMPQ13449 338 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 TEPPQ6URK8 271 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 DNERQ8NFT8 737 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 MRGPRX3Q96LB0 322 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 CCDC140Q96MF4 163 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 STRIP2Q9ULQ0 834 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 HS3ST3A1Q9Y663 406 aa4.96□□□□□ -1.62
NUP54-208ENST00000508604 TCRBV5S2A0A599 114 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 ZNF623O75123 536 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 KCNJ6P48051 423 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 MLLT6P55198 1093 aaPredicted RBP4.95□□□□□ -1.62
NUP54-208ENST00000508604 ARRDC4Q8NCT1 418 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 PHOSPHO1Q8TCT1 267 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 MBD6Q96DN6 1003 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 SEC16BQ96JE7 1060 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 EPB41L1Q9H4G0 881 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 PCDHA2Q9Y5H9 948 aa4.95□□□□□ -1.62
NUP54-208ENST00000508604 KRIT1O00522 736 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 SV2CQ496J9 727 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 ACBD5Q5T8D3 534 aaPredicted RBP4.94□□□□□ -1.62
NUP54-208ENST00000508604 NLRP10Q86W26 655 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 TRIM48Q8IWZ4 208 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 PPIL6Q8IXY8 311 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 BTN2A2Q8WVV5 523 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 ZNF341Q9BYN7 854 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 CLDND1Q9NY35 253 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 MYOTQ9UBF9 498 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.94□□□□□ -1.62
NUP54-208ENST00000508604 TESMINQ9Y4I5 508 aa4.94□□□□□ -1.62
NUP54-208ENST00000508604 PATE3B3GLJ2 98 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 LTBRP36941 435 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 EMC4Q5J8M3 183 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 TMC5Q6UXY8 1006 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 RALYLQ86SE5 291 aaKnown RBP4.93□□□□□ -1.62
NUP54-208ENST00000508604 ZCCHC14Q8WYQ9 949 aaKnown RBP4.93□□□□□ -1.62
NUP54-208ENST00000508604 ANAPC16Q96DE5 110 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 PCED1AQ9H1Q7 454 aa4.93□□□□□ -1.62
NUP54-208ENST00000508604 TADA3O75528 432 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 GJA8P48165 433 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 SPDYAQ5MJ70 313 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 VASNQ6EMK4 673 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 CCDC103Q8IW40 242 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 IFNL2Q8IZJ0 200 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 RCBTB1Q8NDN9 531 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 SMOC1Q9H4F8 434 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 TMEFF2Q9UIK5 374 aaPredicted RBP4.92□□□□□ -1.62
NUP54-208ENST00000508604 FBXO21O94952 628 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms