RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CHRNA2Q15822 529 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 MTFR2Q6P444 385 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RSRC2Q7L4I2 434 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 PPP1R14BQ96C90 147 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 NEDD4LQ96PU5 975 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 OSBPL1AQ9BXW6 950 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 MAN1C1Q9NR34 630 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DDX19AQ9NUU7 478 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 ENC1O14682 589 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RGS6P49758 472 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 PLTPP55058 493 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 RASGRF1Q13972 1273 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 DEPDC1Q5TB30 811 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 TMCO4Q5TGY1 634 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 LYSMD3Q7Z3D4 306 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ZNF513Q8N8E2 541 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 MYRFLQ96LU7 910 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FRMD6Q96NE9 622 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 FOXD4L1Q9NU39 408 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 HPS5Q9UPZ3 1129 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 ANKRD30BQ9BXX2 1392 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 TARSL2A2RTX5 802 aaKnown RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 CHURC1-FNTBB4DL54 471 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 KMOO15229 486 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 TRIM13O60858 407 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 PAX3P23760 479 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 KPNA1P52294 538 aaPredicted RBP6.31□□□□□ -1.4
USF3-204ENST00000496826 TRPM8Q7Z2W7 1104 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 OSBPL6Q9BZF3 934 aa6.31□□□□□ -1.4
USF3-204ENST00000496826 IQANK1A0A1B0GTG1 560 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 SRGAP3O43295 1099 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 LDHAP00338 332 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 FYNP06241 537 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 EFR3AQ14156 821 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 PKN2Q16513 984 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 FAM180AQ6UWF9 173 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ZNF438Q7Z4V0 828 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TRIM50Q86XT4 487 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TNIP2Q8NFZ5 429 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 KATNAL1Q9BW62 490 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 BTBD3Q9Y2F9 522 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 MAGED1Q9Y5V3 778 aaPredicted RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 SUPT3HB4E1H0 165 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TLR2O60603 784 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 STARD3NLO95772 234 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 KRT19P08727 400 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CCT4P50991 539 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 PDX1P52945 283 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 SYCP2LQ5T4T6 812 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 DDI2Q5TDH0 399 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 WNK4Q96J92 1243 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 LZTS2Q9BRK4 669 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 COPRSQ9NQ92 184 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ARL15Q9NXU5 204 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CEP164Q9UPV0 1460 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TNIKQ9UKE5 1360 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 MYO1CO00159 1063 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 STRN3Q13033 797 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CWF19L2Q2TBE0 894 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 NEK5Q6P3R8 708 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 GALNT18Q6P9A2 607 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CEP95Q96GE4 821 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 PSTPIP2Q9H939 334 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 NSMCE4AQ9NXX6 385 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CPSF3Q9UKF6 684 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 IFRD1O00458 451 aaPredicted RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 POLD1P28340 1107 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TFAP4Q01664 338 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 BTBD8Q5XKL5 378 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 SPAG16Q8N0X2 631 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 RNF217Q8TC41 542 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 HDAC2Q92769 488 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 IVNS1ABPQ9Y6Y0 642 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 BAZ1BQ9UIG0 1483 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 APOC1P02654 83 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ALDH18A1P54886 795 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 TRIP10Q15642 601 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 CCDC36Q8IYA8 594 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 PGBD1Q96JS3 809 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 METTL14Q9HCE5 456 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 AVENQ9NQS1 362 aaPredicted RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 DDX41Q9UJV9 622 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 PDE9AO76083 593 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ACTN1P12814 892 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ANO1Q5XXA6 986 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 FAM193BQ96PV7 902 aaPredicted RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 V9GY48 417 aaPredicted RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 SF3B1O75533 1304 aaKnown RBP eCLIP6.3□□□□□ -1.4
USF3-204ENST00000496826 WDR91A4D1P6 747 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 EIF4E1BA6NMX2 242 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 MCF2LO15068 1137 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 AP1G2O75843 785 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 PLEKHA8P1O95397 391 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 FOSL1P15407 271 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 TNFRSF8P28908 595 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 EPS8Q12929 822 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 ART3Q13508 389 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 PKD2Q13563 968 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 USP39Q53GS9 565 aaKnown RBP6.3□□□□□ -1.4
USF3-204ENST00000496826 ELMOD1Q8N336 334 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms