RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FAM205AQ6ZU69 1335 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SHANK3Q9BYB0 1731 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PVALEFA0A1B0GWK0 134 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PP2D1A8MPX8 630 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 DNM1LO00429 736 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 RAD51CO43502 376 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PALMO75781 387 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 GSTA1P08263 222 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 PLCG1P19174 1290 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 HOXD11P31277 338 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 SCTRP47872 440 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 GFPT1Q06210 699 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 ZNF844Q08AG5 666 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 GKAP1Q5VSY0 366 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CRELD2Q6UXH1 353 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 GUF1Q8N442 669 aaKnown RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 LRRC15Q8TF66 581 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 CCT6BQ92526 530 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 TMEM60Q9H2L4 133 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 MMRN2Q9H8L6 949 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 TRMT112Q9UI30 125 aaKnown RBP10.66□□□□□ -0.7
SYNE1-230ENST00000495090 LEMD3Q9Y2U8 911 aa10.66□□□□□ -0.7
SYNE1-230ENST00000495090 BUB1O43683 1085 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 ORC2Q13416 577 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-230ENST00000495090 BYSLQ13895 437 aaKnown RBP10.65□□□□□ -0.7
SYNE1-230ENST00000495090 UAP1Q16222 522 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-230ENST00000495090 HLFQ16534 295 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 TMEM132AQ24JP5 1023 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 PROM2Q8N271 834 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 ACTRT1Q8TDG2 376 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 SCFD2Q8WU76 684 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 PBKQ96KB5 322 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 CENPHQ9H3R5 247 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 CICQ96RK0 1608 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-230ENST00000495090 CACNA1SQ13698 1873 aa10.65□□□□□ -0.7
SYNE1-230ENST00000495090 ERVV-1B6SEH8 477 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 KIF3CO14782 793 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 PPP1R12AO14974 1030 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ADAMTS3O15072 1205 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 FCER1AP12319 257 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 SCP2P22307 547 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 HPDP32754 393 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ERVK-9P63128 1117 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 RIPK1Q13546 671 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 SLC18A3Q16572 532 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 C10orf76Q5T2E6 689 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 RCSD1Q6JBY9 416 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 UNC13DQ70J99 1090 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CACNA2D4Q7Z3S7 1137 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ADGRA1Q86SQ6 560 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 STAG2Q8N3U4 1231 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 MAB21L3Q8N8X9 362 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CEP120Q8N960 986 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 HELBQ8NG08 1087 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 HOOK2Q96ED9 719 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 FAXDC2Q96IV6 333 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 HAUS2Q9NVX0 235 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 PCDHA6Q9UN73 950 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 PCDHA8Q9Y5H6 950 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ZNF804BA4D1E1 1349 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 LAMB1P07942 1786 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CASZ1Q86V15 1759 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 TOGARAM1Q9Y4F4 1720 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 A0A0G2JS52 829 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CCDC188H7C350 402 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 RTN2O75298 545 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 OR52Z1P0C646 297 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 PDHBP11177 359 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CALRP27797 417 aaKnown RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CTNNA1P35221 906 aaKnown RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 GNAQP50148 359 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 SLMAPQ14BN4 828 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CHRNA2Q15822 529 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 QPCTQ16769 361 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 TDRD12Q587J7 1177 aaKnown RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 SFMBT2Q5VUG0 894 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 LRRC55Q6ZSA7 311 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ANKRD13CQ8N6S4 541 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 CCHCR1Q8TD31 782 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 SEC14L1Q92503 715 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 RAPGEF5Q92565 580 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 TAF4BQ92750 862 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 RIC8AQ9NPQ8 531 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 BATF3Q9NR55 127 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 STK17AQ9UEE5 414 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ZNF330Q9Y3S2 320 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-230ENST00000495090 ATP6V0A2Q9Y487 856 aa10.64□□□□□ -0.71
SYNE1-230ENST00000495090 COL1A1P02452 1464 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-230ENST00000495090 NKRFO15226 690 aaKnown RBP eCLIP10.63□□□□□ -0.71
SYNE1-230ENST00000495090 PPIP5K2O43314 1243 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 DRD4P21917 467 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 KLRC1P26715 233 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 BCAMP50895 628 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 USP11P51784 963 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 EIF3BP55884 814 aaKnown RBP10.63□□□□□ -0.71
SYNE1-230ENST00000495090 PSMD2Q13200 908 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 HLTFQ14527 1009 aaKnown RBP eCLIP10.63□□□□□ -0.71
SYNE1-230ENST00000495090 IFI16Q16666 785 aaKnown RBP10.63□□□□□ -0.71
SYNE1-230ENST00000495090 TXNRD1Q16881 649 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 SPRED3Q2MJR0 410 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms