RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KRT79Q5XKE5 535 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 CNNM4Q6P4Q7 775 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 DNAJC7Q99615 494 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 RIC8AQ9NPQ8 531 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 SAR1BQ9Y6B6 198 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 PLIN4Q96Q06 1357 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 HLA-DOAP06340 250 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 EEF2P13639 858 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 NAP1L1P55209 391 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 MSANTD4Q8NCY6 345 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 A0A1W2PQC6 194 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 BICDL2A1A5D9 508 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 E9PMD0 336 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 GGCXP38435 758 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 FXR2P51116 673 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 AMPD2Q01433 879 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 RAD54LQ92698 747 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 CUL5Q93034 780 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 TTYH3Q9C0H2 523 aa18.34■□□□□ 0.53
CCDC88B-210ENST00000494566 ZBTB5O15062 677 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 QRICH1Q2TAL8 776 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 USH1GQ495M9 461 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 DNAAF5Q86Y56 855 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 PROCA1Q8NCQ7 364 aaPredicted RBP18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 MAGEF1Q9HAY2 307 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 RAB21Q9UL25 225 aa18.33■□□□□ 0.53
CCDC88B-210ENST00000494566 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 MOCS3O95396 460 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 NPR1P16066 1061 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 APBA1Q02410 837 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 ARID5AQ03989 594 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 SEPT2Q15019 361 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 GOLGA5Q8TBA6 731 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 NHEJ1Q9H9Q4 299 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 SH3BP5LQ7L8J4 393 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 MMRN2Q9H8L6 949 aa18.33■□□□□ 0.52
CCDC88B-210ENST00000494566 LRRC37AA6NMS7 1700 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 BUB1O43683 1085 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 SLC1A4P43007 532 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 WHAMMP3Q1A5X7 153 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 UNC13DQ70J99 1090 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 NELFCDQ8IXH7 590 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 COG1Q8WTW3 980 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 P2RX7Q99572 595 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 RASSF4Q9H2L5 321 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 PCDHA1Q9Y5I3 950 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEB3A0JP26 581 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 POTECB2RU33 542 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 TULP1O00294 542 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 CLK2P49760 499 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 CENPPQ6IPU0 288 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEBQ6S5H4 581 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 LRRC31Q6UY01 552 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 C2CD5Q86YS7 1000 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 GOLGA6L1Q8N7Z2 621 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 FAM198AQ9UFP1 575 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 SWAP70Q9UH65 585 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 PCDHA12Q9UN75 941 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 CAPN6Q9Y6Q1 641 aa18.32■□□□□ 0.52
CCDC88B-210ENST00000494566 IKQ13123 557 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 NFRKBQ6P4R8 1299 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 SLC30A10Q6XR72 485 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 SRLQ86TD4 932 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 ZHX3Q9H4I2 956 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 KIAA1024Q9UPX6 916 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 IPO7O95373 1038 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 CHRNA5P30532 468 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 JAG1P78504 1218 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 CERKLQ49MI3 558 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 TANGO6Q9C0B7 1094 aa18.31■□□□□ 0.52
CCDC88B-210ENST00000494566 ESYT3A0FGR9 886 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SMCHD1A6NHR9 2005 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SYF2O95926 243 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SND1Q7KZF4 910 aaKnown RBP eCLIP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 TRAPPC11Q7Z392 1133 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SPICE1Q8N0Z3 855 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 NOC3LQ8WTT2 800 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 ZNF263O14978 683 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 MRPL12P52815 198 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 USP14P54578 494 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 CDC37Q16543 378 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SLFN13Q68D06 897 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 KCTD16Q68DU8 428 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 MS4A14Q96JA4 679 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 CRACR2AQ9BSW2 395 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 RAB34Q9BZG1 259 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 NDST4Q9H3R1 872 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 DEF6Q9H4E7 631 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 NLRC4Q9NPP4 1024 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 CWC15Q9P013 229 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 STK17AQ9UEE5 414 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 DMGDHQ9UI17 866 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 SCN9AQ15858 1988 aa18.3■□□□□ 0.52
CCDC88B-210ENST00000494566 hCG_1984214I3L0E3 225 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 APBA3O96018 575 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 SAMD1Q6SPF0 538 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 HHIPL2Q6UWX4 724 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 NLGN1Q8N2Q7 840 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 ZNF713Q8N859 430 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 TMX4Q9H1E5 349 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms