RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 MYSM1Q5VVJ2 828 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 FCHSD1Q86WN1 690 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 DHX38Q92620 1227 aaKnown RBP19.23■□□□□ 0.67
PTPRU-208ENST00000493601 SPATA33Q96N06 139 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 MAP3K14Q99558 947 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 ALG1Q9BT22 464 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 THEGQ9P2T0 379 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 HDAC6Q9UBN7 1215 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 PTPRSQ13332 1948 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 FRMPD4Q14CM0 1322 aa19.23■□□□□ 0.67
PTPRU-208ENST00000493601 HAS3O00219 553 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 PPFIA4O75335 1185 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 DDAH1O94760 285 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 CKBP12277 381 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 UBA1P22314 1058 aaKnown RBP19.22■□□□□ 0.67
PTPRU-208ENST00000493601 KIF5BP33176 963 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 KCNJ6P48051 423 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 PTK7Q13308 1070 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 GNPTABQ3T906 1256 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 CASC1Q6TDU7 716 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 CTCFLQ8NI51 663 aaPredicted RBP19.22■□□□□ 0.67
PTPRU-208ENST00000493601 IGDCC4Q8TDY8 1250 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 MTA3Q9BTC8 594 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 TTC28Q96AY4 2481 aa19.22■□□□□ 0.67
PTPRU-208ENST00000493601 MUC3AQ02505 3323 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 KIF28PB7ZC32 967 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 STAM2O75886 525 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 CCDC85BQ15834 202 aaPredicted RBP19.21■□□□□ 0.67
PTPRU-208ENST00000493601 HSDL1Q3SXM5 330 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 HERC6Q8IVU3 1022 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 ZNF654Q8IZM8 581 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 ATXN2LQ8WWM7 1075 aaKnown RBP19.21■□□□□ 0.67
PTPRU-208ENST00000493601 RRP36Q96EU6 259 aaKnown RBP19.21■□□□□ 0.67
PTPRU-208ENST00000493601 SPZ1Q9BXG8 430 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 MLXIPQ9HAP2 919 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 LY9Q9HBG7 655 aa19.21■□□□□ 0.67
PTPRU-208ENST00000493601 SORBS3O60504 671 aa19.2■□□□□ 0.66
PTPRU-208ENST00000493601 SP2Q02086 613 aa19.2■□□□□ 0.66
PTPRU-208ENST00000493601 CNKSR3Q6P9H4 555 aa19.2■□□□□ 0.66
PTPRU-208ENST00000493601 PIBF1Q8WXW3 757 aa19.2■□□□□ 0.66
PTPRU-208ENST00000493601 PRDM6Q9NQX0 595 aa19.2■□□□□ 0.66
PTPRU-208ENST00000493601 SEC63Q9UGP8 760 aaKnown RBP19.2■□□□□ 0.66
PTPRU-208ENST00000493601 XIRP2A4UGR9 3374 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 PRC1O43663 620 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 CXCL10P02778 98 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 MCM5P33992 734 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 WDR5P61964 334 aaKnown RBP19.19■□□□□ 0.66
PTPRU-208ENST00000493601 CUL5Q93034 780 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 INPP4AQ96PE3 977 aaPredicted RBP19.19■□□□□ 0.66
PTPRU-208ENST00000493601 LZTS2Q9BRK4 669 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 MYL10Q9BUA6 226 aa19.19■□□□□ 0.66
PTPRU-208ENST00000493601 TSPYL2Q9H2G4 693 aaPredicted RBP19.19■□□□□ 0.66
PTPRU-208ENST00000493601 DOCK5Q9H7D0 1870 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 COL4A4P53420 1690 aaPredicted RBP19.18■□□□□ 0.66
PTPRU-208ENST00000493601 NOP56O00567 594 aaKnown RBP19.18■□□□□ 0.66
PTPRU-208ENST00000493601 TLL1O43897 1013 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 NBNO60934 754 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 EFCAB14O75071 495 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 SMARCA1P28370 1054 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 GNAQP50148 359 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 GPNMBQ14956 572 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 NFXL1Q6ZNB6 911 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 TMTC2Q8N394 836 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 MICALL1Q8N3F8 863 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 GPKOWQ92917 476 aaPredicted RBP eCLIP19.18■□□□□ 0.66
PTPRU-208ENST00000493601 TMEM87BQ96K49 555 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 C16orf70Q9BSU1 422 aa19.18■□□□□ 0.66
PTPRU-208ENST00000493601 ABHD14A-ACY1A0A1B0GW23 586 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 CCDC69A6NI79 296 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 FIBPO43427 364 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 GTPBP6O43824 516 aaPredicted RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 ICAM3P32942 547 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 MRPS5P82675 430 aaKnown RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 MRPS9P82933 396 aaKnown RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 TAP1Q03518 808 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 NEDD9Q14511 834 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 TRIM71Q2Q1W2 868 aaKnown RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 ZNF618Q5T7W0 954 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 METTL7BQ6UX53 244 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 SERINC5Q86VE9 423 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 SMARCC2Q8TAQ2 1214 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 ZFP91Q96JP5 570 aaPredicted RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 ASB2Q96Q27 587 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 LSG1Q9H089 658 aaKnown RBP19.17■□□□□ 0.66
PTPRU-208ENST00000493601 EMSYQ7Z589 1322 aa19.17■□□□□ 0.66
PTPRU-208ENST00000493601 H3BRB1 525 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 PIK3CDO00329 1044 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 SH2B2O14492 632 aaPredicted RBP19.16■□□□□ 0.66
PTPRU-208ENST00000493601 LGALS2P05162 132 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 CALM1P0DP23 149 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 CALM2P0DP24 149 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 CALM3P0DP25 149 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 ZNF200P98182 395 aaPredicted RBP19.16■□□□□ 0.66
PTPRU-208ENST00000493601 PCNX4Q63HM2 1172 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 XRRA1Q6P2D8 792 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 IL27Q8NEV9 243 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 WNT8BQ93098 351 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 ESYT1Q9BSJ8 1104 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 ZBED2Q9BTP6 218 aa19.16■□□□□ 0.66
PTPRU-208ENST00000493601 TUT1Q9H6E5 874 aaKnown RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms