RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 SP2Q02086 613 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 TRAF1Q13077 416 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 COL9A3Q14050 684 aaPredicted RBP18.19■□□□□ 0.5
SMPD4-220ENST00000491319 KIAA0753Q2KHM9 967 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 HSDL1Q3SXM5 330 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 CELF3Q5SZQ8 465 aaKnown RBP18.19■□□□□ 0.5
SMPD4-220ENST00000491319 MYSM1Q5VVJ2 828 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 ZNF654Q8IZM8 581 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 C7orf31Q8N865 590 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 AFAP1L1Q8TED9 768 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 SLC9A7Q96T83 725 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 LY9Q9HBG7 655 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 REV3LO60673 3130 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 CA3P07451 260 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 GPNMBQ14956 572 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 KCNV1Q6PIU1 500 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 LRRC8DQ7L1W4 858 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 SPATA33Q96N06 139 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 LSG1Q9H089 658 aaKnown RBP18.18■□□□□ 0.5
SMPD4-220ENST00000491319 TTC28Q96AY4 2481 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 FRMPD4Q14CM0 1322 aa18.18■□□□□ 0.5
SMPD4-220ENST00000491319 SPTBN5Q9NRC6 3674 aaKnown RBP18.18■□□□□ 0.5
SMPD4-220ENST00000491319 SIP14410 1827 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 DDAH1O94760 285 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 CKBP12277 381 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 SELPP16109 830 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 RBL2Q08999 1139 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 CCDC85BQ15834 202 aaPredicted RBP18.17■□□□□ 0.5
SMPD4-220ENST00000491319 WNT8BQ93098 351 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 SPZ1Q9BXG8 430 aa18.17■□□□□ 0.5
SMPD4-220ENST00000491319 TCF20Q9UGU0 1960 aaKnown RBP18.17■□□□□ 0.5
SMPD4-220ENST00000491319 PRC1O43663 620 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 BAIAP3O94812 1187 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 ARHGEF15O94989 841 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 MRPS9P82933 396 aaKnown RBP18.16■□□□□ 0.5
SMPD4-220ENST00000491319 ZNF200P98182 395 aaPredicted RBP18.16■□□□□ 0.5
SMPD4-220ENST00000491319 HIC1Q14526 733 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 CASC1Q6TDU7 716 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 CTCFLQ8NI51 663 aaPredicted RBP18.16■□□□□ 0.5
SMPD4-220ENST00000491319 BCAS3Q9H6U6 928 aa18.16■□□□□ 0.5
SMPD4-220ENST00000491319 TRANK1O15050 2925 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 SH2B2O14492 632 aaPredicted RBP18.15■□□□□ 0.5
SMPD4-220ENST00000491319 NBNO60934 754 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 PPFIA4O75335 1185 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 PLEKHA8P1O95397 391 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 TGFB3P10600 412 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 RXRAP19793 462 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 KIF5BP33176 963 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 TRIM71Q2Q1W2 868 aaKnown RBP18.15■□□□□ 0.5
SMPD4-220ENST00000491319 HERC6Q8IVU3 1022 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 PHOSPHO2Q8TCD6 241 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 RRP36Q96EU6 259 aaKnown RBP18.15■□□□□ 0.5
SMPD4-220ENST00000491319 MAP3K14Q99558 947 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 ESYT1Q9BSJ8 1104 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 C16orf70Q9BSU1 422 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 CERS4Q9HA82 394 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 MLXIPQ9HAP2 919 aa18.15■□□□□ 0.5
SMPD4-220ENST00000491319 SLC27A2O14975 620 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 MCM5P33992 734 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 WDR5P61964 334 aaKnown RBP18.14■□□□□ 0.49
SMPD4-220ENST00000491319 SEMA3FQ13275 785 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 PTK7Q13308 1070 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 TCTN1Q2MV58 587 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 TJAP1Q5JTD0 557 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 TRAF7Q6Q0C0 670 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 USP17L6PQ6QN14 398 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 NFXL1Q6ZNB6 911 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 TMCO2Q7Z6W1 182 aaPredicted RBP18.14■□□□□ 0.49
SMPD4-220ENST00000491319 SKAP1Q86WV1 359 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 CMTR1Q8N1G2 835 aaKnown RBP18.14■□□□□ 0.49
SMPD4-220ENST00000491319 MICALL1Q8N3F8 863 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 INPP4AQ96PE3 977 aaPredicted RBP18.14■□□□□ 0.49
SMPD4-220ENST00000491319 MTA3Q9BTC8 594 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 THEGQ9P2T0 379 aa18.14■□□□□ 0.49
SMPD4-220ENST00000491319 EPOPA6NHQ4 379 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 CCDC69A6NI79 296 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 RFXAPO00287 272 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 CXCL10P02778 98 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 LGALS2P05162 132 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 KCNJ6P48051 423 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 DEFB103AP81534 67 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 TAP1Q03518 808 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 MBTPS1Q14703 1052 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 GNPTABQ3T906 1256 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 ZNF618Q5T7W0 954 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 CNKSR3Q6P9H4 555 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 RAB11FIP4Q86YS3 637 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 SRBD1Q8N5C6 995 aaKnown RBP18.13■□□□□ 0.49
SMPD4-220ENST00000491319 SMARCC2Q8TAQ2 1214 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 TMEM87BQ96K49 555 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 LRRC2Q9BYS8 371 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 RTEL1Q9NZ71 1219 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 SEC63Q9UGP8 760 aaKnown RBP18.13■□□□□ 0.49
SMPD4-220ENST00000491319 NLRC5Q86WI3 1866 aa18.13■□□□□ 0.49
SMPD4-220ENST00000491319 MEIS2O14770 477 aa18.12■□□□□ 0.49
SMPD4-220ENST00000491319 STAM2O75886 525 aa18.12■□□□□ 0.49
SMPD4-220ENST00000491319 PARNO95453 639 aaKnown RBP18.12■□□□□ 0.49
SMPD4-220ENST00000491319 ICAM3P32942 547 aa18.12■□□□□ 0.49
SMPD4-220ENST00000491319 NECTIN1Q15223 517 aa18.12■□□□□ 0.49
SMPD4-220ENST00000491319 CREB3L3Q68CJ9 461 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms