RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 PRAMEF19Q5SWL8 479 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 MBOAT7Q96N66 472 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 SDF4Q9BRK5 362 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 AP5M1Q9H0R1 490 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 KCNH7Q9NS40 1196 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 TBC1D22BQ9NU19 505 aa22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 DDX25Q9UHL0 483 aaKnown RBP22.52■■□□□ 1.2
SHROOM3-209ENST00000490690 BAG4O95429 457 aaKnown RBP22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 ADCYAP1R1P41586 468 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 LAMC2Q13753 1193 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 CCDC62Q6P9F0 684 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 SLFN12Q8IYM2 578 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 ARRDC4Q8NCT1 418 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 TRPV1Q8NER1 839 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 EMID1Q96A84 441 aaPredicted RBP22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 UNC93B1Q9H1C4 597 aa22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 DDX41Q9UJV9 622 aaKnown RBP22.51■■□□□ 1.19
SHROOM3-209ENST00000490690 FAM86B1E9PN63 330 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 LAD1O00515 517 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 ADAMTS3O15072 1205 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 ZEB2O60315 1214 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 MARCH6O60337 910 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 RGS20O76081 388 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 FAM86B2P0C5J1 330 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 ZSCAN22P10073 491 aaPredicted RBP22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 COL13A1Q5TAT6 717 aaPredicted RBP22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 RNF180Q86T96 592 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 FAM20AQ96MK3 541 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 CIZ1Q9ULV3 898 aaPredicted RBP22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 CEP131Q9UPN4 1083 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 NFASCO94856 1347 aa22.5■■□□□ 1.19
SHROOM3-209ENST00000490690 IGLV3-22A0A075B6J6 115 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 KIF28PB7ZC32 967 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 NEMFO60524 1076 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 CPT1AP50416 773 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 TTC38Q5R3I4 469 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 METTL7BQ6UX53 244 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 DHX37Q8IY37 1157 aaKnown RBP22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 RIT2Q99578 217 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 ZNF577Q9BSK1 485 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 MLXIPQ9HAP2 919 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 XPNPEP3Q9NQH7 507 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 PDGFCQ9NRA1 345 aa22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 GNEQ9Y223 722 aaKnown RBP22.49■■□□□ 1.19
SHROOM3-209ENST00000490690 LRRC37A2A6NM11 1700 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 IPO5O00410 1097 aaKnown RBP22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 SMPD1P17405 629 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 UBA1P22314 1058 aaKnown RBP22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 GJA9P57773 515 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 NKX3-2P78367 333 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 MTFR1Q15390 333 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 EARS2Q5JPH6 523 aaKnown RBP22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 MYSM1Q5VVJ2 828 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 ATL3Q6DD88 541 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 TLK2Q86UE8 772 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 TNS4Q8IZW8 715 aa22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 AGO4Q9HCK5 861 aaKnown RBP22.48■■□□□ 1.19
SHROOM3-209ENST00000490690 KPNA6O60684 536 aa22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 TDP2O95551 362 aa22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 CELF3Q5SZQ8 465 aaKnown RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 ANKLE1Q8NAG6 615 aa22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 PCSK9Q8NBP7 692 aaKnown RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 OR6J1Q8NGC5 347 aa22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 ZNF396Q96N95 335 aaPredicted RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 IPO9Q96P70 1041 aaKnown RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 DEFB118Q96PH6 123 aa22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 UPF3AQ9H1J1 476 aaKnown RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 DDX49Q9Y6V7 483 aaKnown RBP22.47■■□□□ 1.19
SHROOM3-209ENST00000490690 NOP56O00567 594 aaKnown RBP22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 SGPL1O95470 568 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 GGPS1O95749 300 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 F13A1P00488 732 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 CST5P28325 142 aaPredicted RBP22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 GJA8P48165 433 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 KRT76Q01546 638 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 RESTQ13127 1097 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 FERMT3Q86UX7 667 aa22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 U2AF1L4Q8WU68 220 aaKnown RBP22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 JPH1Q9HDC5 661 aaPredicted RBP22.46■■□□□ 1.19
SHROOM3-209ENST00000490690 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 DYNC1LI2O43237 492 aaPredicted RBP22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 GAS7O60861 476 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 BRD1O95696 1058 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 KCNA2P16389 499 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 CALCRLQ16602 461 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 LY6KQ17RY6 165 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 LHX8Q68G74 356 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 PPTC7Q8NI37 304 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 CYP2W1Q8TAV3 490 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 LENG9Q96B70 501 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 ABHD8Q96I13 439 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 TSEN34Q9BSV6 310 aaKnown RBP22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 TEKT3Q9BXF9 490 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 RAB34Q9BZG1 259 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 KCNMB3Q9NPA1 279 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 OGDHLQ9ULD0 1010 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 MCM3APO60318 1980 aa22.45■■□□□ 1.18
SHROOM3-209ENST00000490690 FAM205CA6NFA0 338 aa22.44■■□□□ 1.18
SHROOM3-209ENST00000490690 KBTBD13C9JR72 458 aa22.44■■□□□ 1.18
SHROOM3-209ENST00000490690 MSH4O15457 936 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms