RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 SUPT20HL2P0C7V6 817 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 MYCLP12524 364 aaPredicted RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 CCND2P30279 289 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 ARHGAP1Q07960 439 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 PPIGQ13427 754 aaKnown RBP eCLIP12.12□□□□□ -0.475e-11■□□□□ 9.3
SCAMP4-208ENST00000489554 PGM5Q15124 567 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 LY6KQ17RY6 165 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 C9orf50Q5SZB4 431 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 VSIG10LQ86VR7 867 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 FCHSD1Q86WN1 690 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 TMEM199Q8N511 208 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 CUL5Q93034 780 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 EMID1Q96A84 441 aaPredicted RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 LLPHQ9BRT6 129 aaKnown RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 FOXD4L1Q9NU39 408 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 RBM28Q9NW13 759 aaKnown RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 DDX41Q9UJV9 622 aaKnown RBP12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 MRVI1Q9Y6F6 885 aa12.12□□□□□ -0.47
SCAMP4-208ENST00000489554 LAMA3Q16787 3333 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 B4GALT4O60513 344 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 STAM2O75886 525 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 TGFB3P10600 412 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 PTPN11Q06124 597 aaPredicted RBP12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 LAMC2Q13753 1193 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 PKN1Q16512 942 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 NFRKBQ6P4R8 1299 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 SPRYD3Q8NCJ5 442 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 AFG1LQ8WV93 481 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 PHKBQ93100 1093 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 PPP1R12CQ9BZL4 782 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 HIPK3Q9H422 1215 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 FRMPD4Q14CM0 1322 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 STK36Q9NRP7 1315 aa12.11□□□□□ -0.47
SCAMP4-208ENST00000489554 PIK3CDO00329 1044 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 MMP3P08254 477 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 EPHB4P54760 987 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 DGKDQ16760 1214 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 NBPF20Q3BBV1 942 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 GNPTABQ3T906 1256 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 DHX37Q8IY37 1157 aaKnown RBP12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 IL31RAQ8NI17 732 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 RNPC3Q96LT9 517 aaKnown RBP12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 AIFM3Q96NN9 605 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 TRPV6Q9H1D0 765 aa12.1□□□□□ -0.47
SCAMP4-208ENST00000489554 CCDC196A0A1B0GTZ2 297 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 hCG_1642624A0A1W2PR95 340 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 PRPF3O43395 683 aaKnown RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 RGS20O76081 388 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 CSF2RAP15509 400 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 GJB2P29033 226 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 CYP2C18P33260 490 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 SMAD3P84022 425 aaKnown RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 FAM47CQ5HY64 1035 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 FAM109BQ6ICB4 259 aaPredicted RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 XRRA1Q6P2D8 792 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 PSRC1Q6PGN9 363 aaPredicted RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 TEX2Q8IWB9 1127 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 CCDC82Q8N4S0 544 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 DEFB123Q8N688 67 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 PPTC7Q8NI37 304 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 NOC4LQ9BVI4 516 aaKnown RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 KATNAL1Q9BW62 490 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 RNF26Q9BY78 433 aaPredicted RBP12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 PSTPIP2Q9H939 334 aa12.09□□□□□ -0.47
SCAMP4-208ENST00000489554 MEIS2O14770 477 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 ICAM3P32942 547 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 CELF3Q5SZQ8 465 aaKnown RBP12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 MYSM1Q5VVJ2 828 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 PCNX4Q63HM2 1172 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 USP17L6PQ6QN14 398 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 SESTD1Q86VW0 696 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 INPP4AQ96PE3 977 aaPredicted RBP12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 SLC26A6Q9BXS9 759 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 IL23AQ9NPF7 189 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 TRMT13Q9NUP7 481 aaKnown RBP12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 SZT2Q5T011 3432 aa12.08□□□□□ -0.48
SCAMP4-208ENST00000489554 SCN10AQ9Y5Y9 1956 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 hCG_1984214I3L0E3 225 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 CPLX1O14810 134 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 FIBPO43427 364 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 PPFIA4O75335 1185 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 CDKL5O76039 1030 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 GGPS1O95749 300 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 HOXD8P13378 290 aaPredicted RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 UBA1P22314 1058 aaKnown RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 MRPS9P82933 396 aaKnown RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 HMGN5P82970 282 aaKnown RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 PKP1Q13835 747 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 TMEM240Q5SV17 173 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 TYW1BQ6NUM6 668 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 PPP1R18Q6NYC8 613 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 HEATR3Q7Z4Q2 680 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 ZNF713Q8N859 430 aaPredicted RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 SPATA33Q96N06 139 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.07□□□□□ -0.481e-8■□□□□ 8.6
SCAMP4-208ENST00000489554 MTIF3Q9H2K0 278 aaKnown RBP12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 MLXIPQ9HAP2 919 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 GJB4Q9NTQ9 266 aa12.07□□□□□ -0.48
SCAMP4-208ENST00000489554 ORC3Q9UBD5 711 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms