RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MFSD10Q14728 455 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 HSDL1Q3SXM5 330 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 RAB11FIP4Q86YS3 637 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 SRBD1Q8N5C6 995 aaKnown RBP14.2□□□□□ -0.14
SDC3-204ENST00000487984 DHX38Q92620 1227 aaKnown RBP14.2□□□□□ -0.14
SDC3-204ENST00000487984 SPATA33Q96N06 139 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 LZTS2Q9BRK4 669 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 ALG1Q9BT22 464 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 KATNAL1Q9BW62 490 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 NKX2-4Q9H2Z4 354 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 HDAC6Q9UBN7 1215 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 SEC63Q9UGP8 760 aaKnown RBP14.2□□□□□ -0.14
SDC3-204ENST00000487984 GTF2IRD1Q9UHL9 959 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 KIAA1217Q5T5P2 1943 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 HAS3O00219 553 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 ATP2A2P16615 1042 aaKnown RBP14.19□□□□□ -0.14
SDC3-204ENST00000487984 GNAQP50148 359 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 RABGGTBP53611 331 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 MRPS9P82933 396 aaKnown RBP14.19□□□□□ -0.14
SDC3-204ENST00000487984 KIAA0753Q2KHM9 967 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 USP17L6PQ6QN14 398 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 CMTR1Q8N1G2 835 aaKnown RBP14.19□□□□□ -0.14
SDC3-204ENST00000487984 CCDC155Q8N6L0 562 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 C7orf31Q8N865 590 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 CAGE1Q8TC20 777 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 INPP4AQ96PE3 977 aaPredicted RBP14.19□□□□□ -0.14
SDC3-204ENST00000487984 SLC12A7Q9Y666 1083 aa14.19□□□□□ -0.14
SDC3-204ENST00000487984 PRUNE2Q8WUY3 3088 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 MEIS2O14770 477 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 PPFIA4O75335 1185 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 CALM1P0DP23 149 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 CALM2P0DP24 149 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 CALM3P0DP25 149 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 SEMA3FQ13275 785 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 GNPTABQ3T906 1256 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 SMARCC2Q8TAQ2 1214 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 AFAP1L1Q8TED9 768 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 CUL5Q93034 780 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 FTOQ9C0B1 505 aaKnown RBP eCLIP14.18□□□□□ -0.14
SDC3-204ENST00000487984 PRDM12Q9H4Q4 367 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 BCAS3Q9H6U6 928 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 MLXIPQ9HAP2 919 aa14.18□□□□□ -0.14
SDC3-204ENST00000487984 hCG_1642624A0A1W2PR95 340 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 PIK3CDO00329 1044 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 STAM2O75886 525 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 ACTN1P12814 892 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 MYOGP15173 224 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 SELPP16109 830 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 ICAM3P32942 547 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 ZNF200P98182 395 aaPredicted RBP14.17□□□□□ -0.14
SDC3-204ENST00000487984 RBL2Q08999 1139 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 GPNMBQ14956 572 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 RNF20Q5VTR2 975 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 TMTC3Q6ZXV5 915 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 SGMS1Q86VZ5 419 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 MICU3Q86XE3 530 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 C16orf70Q9BSU1 422 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 SLC28A3Q9HAS3 691 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 RTEL1Q9NZ71 1219 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 PCDHA11Q9Y5I1 949 aa14.17□□□□□ -0.14
SDC3-204ENST00000487984 SPATA31C2B4DYI2 1134 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 FIBPO43427 364 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 CDC45O75419 566 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 CKBP12277 381 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 PTK7Q13308 1070 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 HIC1Q14526 733 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 PCNX4Q63HM2 1172 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 LRRC8DQ7L1W4 858 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 RASEFQ8IZ41 740 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 CCDC82Q8N4S0 544 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 USP38Q8NB14 1042 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 FANCBQ8NB91 859 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 WNT8BQ93098 351 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 NEK1Q96PY6 1258 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 GAS2L1Q99501 681 aaPredicted RBP14.16□□□□□ -0.14
SDC3-204ENST00000487984 VCANP13611 3396 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 CHD7Q9P2D1 2997 aa14.16□□□□□ -0.14
SDC3-204ENST00000487984 SCN5AQ14524 2016 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 TANC1Q9C0D5 1861 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 NOP56O00567 594 aaKnown RBP14.15□□□□□ -0.14
SDC3-204ENST00000487984 LGALS2P05162 132 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 EXOSC10Q01780 885 aaKnown RBP14.15□□□□□ -0.14
SDC3-204ENST00000487984 ADGRE1Q14246 886 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 NEDD9Q14511 834 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 TRIM71Q2Q1W2 868 aaKnown RBP14.15□□□□□ -0.14
SDC3-204ENST00000487984 ADCK5Q3MIX3 580 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 PPP2R2DQ66LE6 453 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 XRRA1Q6P2D8 792 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 APOA5Q6Q788 366 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 METTL7BQ6UX53 244 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 CYFIP1Q7L576 1253 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 CCDC136Q96JN2 1154 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 TCEANC2Q96MN5 208 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 SLC9A7Q96T83 725 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 COL25A1Q9BXS0 654 aaPredicted RBP14.15□□□□□ -0.14
SDC3-204ENST00000487984 PSTPIP2Q9H939 334 aa14.15□□□□□ -0.14
SDC3-204ENST00000487984 H3BRB1 525 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 RBAK-RBAKDNI3L0D1 243 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 NBNO60934 754 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 BAIAP3O94812 1187 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms