RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GOLGA3Q08378 1498 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 ARID4BQ4LE39 1312 aaPredicted RBP5.35□□□□□ -1.55
PTCD3-216ENST00000487043 LRRC10BA6NIK2 292 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 H3BS24 57 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CBX4O00257 560 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 ZEB2O60315 1214 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 GAS7O60861 476 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 F2P00734 622 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CKMP06732 381 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 DNM2P50570 870 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 MCL1Q07820 350 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 PPP2R5AQ15172 486 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 TESK1Q15569 626 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 INF2Q27J81 1249 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 RTP2Q5QGT7 225 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 IQCEQ6IPM2 695 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 ANKLE2Q86XL3 938 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 KIF18BQ86Y91 864 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CPNE8Q86YQ8 564 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CNTD1Q8N815 330 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 PCDH19Q8TAB3 1148 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 UBE2FQ969M7 185 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CHAMP1Q96JM3 812 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 FAM84AQ96KN4 292 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 HSPA12BQ96MM6 686 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 YIPF4Q9BSR8 244 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CDADC1Q9BWV3 514 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 TRIM8Q9BZR9 551 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 MKNK2Q9HBH9 465 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 CABP5Q9NP86 173 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 SLC52A1Q9NWF4 448 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 APOBEC2Q9Y235 224 aaKnown RBP5.35□□□□□ -1.55
PTCD3-216ENST00000487043 PCDHA2Q9Y5H9 948 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 ZNF608Q9ULD9 1512 aaPredicted RBP5.34□□□□□ -1.55
PTCD3-216ENST00000487043 RAPGEF2Q9Y4G8 1499 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 TNIKQ9UKE5 1360 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 SHTN1A0MZ66 631 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 TRAF5O00463 557 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 FGF10O15520 208 aaPredicted RBP5.34□□□□□ -1.55
PTCD3-216ENST00000487043 FKBP9O95302 570 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 SOD2P04179 222 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 ADCYAP1R1P41586 468 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 NEK2P51955 445 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 OXCT1P55809 520 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 ST5P78524 1137 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 LAPTM5Q13571 262 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 LRRC41Q15345 812 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 NFE2Q16621 373 aaPredicted RBP5.34□□□□□ -1.55
PTCD3-216ENST00000487043 NKPD1Q17RQ9 610 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 KIZQ2M2Z5 673 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 TMEM177Q53S58 311 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 MBLAC2Q68D91 279 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 SPOCD1Q6ZMY3 1216 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 FKBP9P1Q75LS8 142 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 NAT16Q8N8M0 369 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 LINC00116Q8NCU8 138 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 SMC1BQ8NDV3 1235 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 PTCHD1Q96NR3 888 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 MMP19Q99542 508 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 ORAI3Q9BRQ5 295 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 PUS7LQ9H0K6 701 aaKnown RBP5.34□□□□□ -1.55
PTCD3-216ENST00000487043 IPPKQ9H8X2 491 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 CRTAC1Q9NQ79 661 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 PRDM7Q9NQW5 492 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 AASDHPPTQ9NRN7 309 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 THG1LQ9NWX6 298 aaKnown RBP5.34□□□□□ -1.55
PTCD3-216ENST00000487043 TRHDEQ9UKU6 1024 aa5.34□□□□□ -1.55
PTCD3-216ENST00000487043 GRIN2BQ13224 1484 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 TRBV23OR9-2A0A075B6M9 112 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 CCDC66A2RUB6 948 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 TSPAN6O43657 245 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 MYO1BO43795 1136 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 MAP4K4O95819 1239 aaPredicted RBP5.33□□□□□ -1.56
PTCD3-216ENST00000487043 LTKP29376 864 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 RAB27AP51159 221 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 DSG1Q02413 1049 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 IKZF1Q13422 519 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 KCNMB1Q16558 191 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 MLANAQ16655 118 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 ATP13A4Q4VNC1 1196 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 FAM47CQ5HY64 1035 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 LCE4AQ5TA78 99 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 IQSEC1Q6DN90 963 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 SLC23A3Q6PIS1 610 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 ZPBP2Q6X784 338 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 ZSWIM9Q86XI8 627 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 SPACA3Q8IXA5 215 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 CISD2Q8N5K1 135 aaKnown RBP5.33□□□□□ -1.56
PTCD3-216ENST00000487043 CHTF18Q8WVB6 975 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 FBXW5Q969U6 566 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 CELF4Q9BZC1 486 aaKnown RBP5.33□□□□□ -1.56
PTCD3-216ENST00000487043 FAM53CQ9NYF3 392 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 PPARGC1AQ9UBK2 798 aaKnown RBP5.33□□□□□ -1.56
PTCD3-216ENST00000487043 DUSP13Q9UII6 198 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 PLAGL2Q9UPG8 496 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 CUL7Q14999 1698 aa5.33□□□□□ -1.56
PTCD3-216ENST00000487043 PTPDC1A2A3K4 754 aa5.32□□□□□ -1.56
PTCD3-216ENST00000487043 FAM47E-STBD1D6RA91 191 aa5.32□□□□□ -1.56
PTCD3-216ENST00000487043 PRKD3O94806 890 aa5.32□□□□□ -1.56
PTCD3-216ENST00000487043 TBC1D8O95759 1140 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms