RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SH3D21A4FU49 640 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 STAT5AP42229 794 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 SLURP1P55000 103 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 RBM10P98175 930 aaKnown RBP6.16□□□□□ -1.42
VPS41-213ENST00000485955 SMAD4Q13485 552 aaKnown RBP6.16□□□□□ -1.42
VPS41-213ENST00000485955 CR1LQ2VPA4 569 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 MTERF2Q49AM1 385 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 FAM209AQ5JX71 171 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 STEAP3Q658P3 488 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 RSPO2Q6UXX9 243 aaPredicted RBP6.16□□□□□ -1.42
VPS41-213ENST00000485955 LINC00482Q8N8I6 264 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 ZBTB8AQ96BR9 441 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 HIRIP3Q9BW71 556 aaPredicted RBP6.16□□□□□ -1.42
VPS41-213ENST00000485955 RAPGEFL1Q9UHV5 662 aa6.16□□□□□ -1.42
VPS41-213ENST00000485955 TCRBV5S2A0A599 114 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 DGKIO75912 1065 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 FAM153BP0C7A2 387 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 CYP2C8P10632 490 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 SSRP1Q08945 709 aaKnown RBP6.15□□□□□ -1.42
VPS41-213ENST00000485955 IFRD2Q12894 506 aaPredicted RBP6.15□□□□□ -1.42
VPS41-213ENST00000485955 EMC4Q5J8M3 183 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 STYK1Q6J9G0 422 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 LBX2Q6XYB7 198 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 LIPIQ6XZB0 460 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 RBM12BQ8IXT5 1001 aaKnown RBP6.15□□□□□ -1.42
VPS41-213ENST00000485955 ZBTB38Q8NAP3 1195 aaPredicted RBP6.15□□□□□ -1.42
VPS41-213ENST00000485955 ARMC5Q96C12 935 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 C11orf84Q9BUA3 381 aaPredicted RBP6.15□□□□□ -1.42
VPS41-213ENST00000485955 EPB41L1Q9H4G0 881 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 ZNF652Q9Y2D9 606 aa6.15□□□□□ -1.42
VPS41-213ENST00000485955 SASH1O94885 1247 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 CTSWP56202 376 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 RASA3Q14644 834 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 FAM126BQ8IXS8 530 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 PIP4K2CQ8TBX8 421 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 SPATA25Q9BR10 227 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 KRTAP4-9Q9BYQ8 210 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 LUC7LQ9NQ29 371 aaKnown RBP6.14□□□□□ -1.43
VPS41-213ENST00000485955 WASF3Q9UPY6 502 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 TRAF6Q9Y4K3 522 aa6.14□□□□□ -1.43
VPS41-213ENST00000485955 COL6A2P12110 1019 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 KCNC1P48547 511 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 SCUBE1Q8IWY4 988 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 CARFQ8N187 725 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 CLEC4DQ8WXI8 215 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 KCNJ15Q99712 375 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 SLC6A20Q9NP91 592 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 SNTG2Q9NY99 539 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 PCDHB4Q9Y5E5 795 aa6.13□□□□□ -1.43
VPS41-213ENST00000485955 SLC27A2O14975 620 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 LRG1P02750 347 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 C6orf222P0C671 652 aaPredicted RBP6.12□□□□□ -1.43
VPS41-213ENST00000485955 ITGA1P56199 1179 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 GPR85P60893 370 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 CHRNA2Q15822 529 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 SP8Q8IXZ3 490 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 IFNL3Q8IZI9 196 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 KDM2BQ8NHM5 1336 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 EXOC2Q96KP1 924 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 DEPDC7Q96QD5 511 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 DNAJC7Q99615 494 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 CDC6Q99741 560 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 ZFYVE21Q9BQ24 234 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 ADAM7Q9H2U9 754 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 SMOC1Q9H4F8 434 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 MYOTQ9UBF9 498 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 ASH2LQ9UBL3 628 aa6.12□□□□□ -1.43
VPS41-213ENST00000485955 TRBV23-1A0A0A0MS06 115 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 NKRFO15226 690 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS41-213ENST00000485955 SOD2P04179 222 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 GRK2P25098 689 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 THBS2P35442 1172 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 GRK3P35626 688 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 ADAM9Q13443 819 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 KIZQ2M2Z5 673 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 TEPPQ6URK8 271 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 OTOP3Q7RTS5 596 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 ZC3H18Q86VM9 953 aaKnown RBP6.11□□□□□ -1.43
VPS41-213ENST00000485955 KYQ8NBH2 561 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 PMFBP1Q8TBY8 1022 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 TOE1Q96GM8 510 aaKnown RBP6.11□□□□□ -1.43
VPS41-213ENST00000485955 YIPF4Q9BSR8 244 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 IPPKQ9H8X2 491 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 DTLQ9NZJ0 730 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 RBPJLQ9UBG7 517 aa6.11□□□□□ -1.43
VPS41-213ENST00000485955 LTFP02788 710 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 SARSP49591 514 aaKnown RBP6.1□□□□□ -1.43
VPS41-213ENST00000485955 NKX3-2P78367 333 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 GRIN1Q05586 938 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 RTP5Q14D33 572 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 PRR31Q5SQ13 230 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 NT5DC1Q5TFE4 455 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 TTLL7Q6ZT98 887 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 LRP10Q7Z4F1 713 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS41-213ENST00000485955 NTMQ9P121 344 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 TELO2Q9Y4R8 837 aa6.1□□□□□ -1.43
VPS41-213ENST00000485955 TCRBV5S4A2TA0A5A2 114 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 KRIT1O00522 736 aa6.09□□□□□ -1.43
VPS41-213ENST00000485955 SMARCA5O60264 1052 aaPredicted RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms