RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NUCB2P80303 420 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 PURAQ00577 322 aaKnown RBP19.52■□□□□ 0.72
VIM-205ENST00000485947 FPGSQ05932 587 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 MFSD5Q6N075 450 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 RAB11FIP4Q86YS3 637 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 EMID1Q96A84 441 aaPredicted RBP19.52■□□□□ 0.72
VIM-205ENST00000485947 FAM217BQ9NTX9 383 aaPredicted RBP19.52■□□□□ 0.72
VIM-205ENST00000485947 SEC63Q9UGP8 760 aaKnown RBP19.52■□□□□ 0.72
VIM-205ENST00000485947 LTBP2Q14767 1821 aa19.52■□□□□ 0.72
VIM-205ENST00000485947 STK36Q9NRP7 1315 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 LAMA2P24043 3122 aaKnown RBP19.51■□□□□ 0.71
VIM-205ENST00000485947 MYH6P13533 1939 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 IFNAR1P17181 557 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 PTPN11Q06124 597 aaPredicted RBP19.51■□□□□ 0.71
VIM-205ENST00000485947 FAM109BQ6ICB4 259 aaPredicted RBP19.51■□□□□ 0.71
VIM-205ENST00000485947 VSIG10LQ86VR7 867 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 TMEM199Q8N511 208 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 PDCD2LQ9BRP1 358 aa19.51■□□□□ 0.71
VIM-205ENST00000485947 PIK3CDO00329 1044 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 EIF2AK2P19525 551 aaKnown RBP19.5■□□□□ 0.71
VIM-205ENST00000485947 ITGB8P26012 769 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 ADD1P35611 737 aaKnown RBP19.5■□□□□ 0.71
VIM-205ENST00000485947 PPIGQ13427 754 aaKnown RBP eCLIP19.5■□□□□ 0.71
VIM-205ENST00000485947 NTRK3Q16288 839 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 TMEM63BQ5T3F8 832 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 XRRA1Q6P2D8 792 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 NFRKBQ6P4R8 1299 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 SEPT14Q6ZU15 432 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.5■□□□□ 0.71
VIM-205ENST00000485947 FAM184AQ8NB25 1140 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 EYSQ5T1H1 3165 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 GRIN2DO15399 1336 aa19.5■□□□□ 0.71
VIM-205ENST00000485947 JAK2O60674 1132 aa19.49■□□□□ 0.71
VIM-205ENST00000485947 LAMC2Q13753 1193 aa19.49■□□□□ 0.71
VIM-205ENST00000485947 PGM5Q15124 567 aa19.49■□□□□ 0.71
VIM-205ENST00000485947 SHHQ15465 462 aa19.49■□□□□ 0.71
VIM-205ENST00000485947 DDX41Q9UJV9 622 aaKnown RBP19.49■□□□□ 0.71
VIM-205ENST00000485947 DNAH12Q6ZR08 3092 aa19.49■□□□□ 0.71
VIM-205ENST00000485947 ARIH2O95376 493 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 MYL3P08590 195 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 CCND2P30279 289 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 SMAD3P84022 425 aaKnown RBP19.48■□□□□ 0.71
VIM-205ENST00000485947 TMTC3Q6ZXV5 915 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 TRIM22Q8IYM9 498 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 CUL5Q93034 780 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 MRVI1Q9Y6F6 885 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 FRMPD4Q14CM0 1322 aa19.48■□□□□ 0.71
VIM-205ENST00000485947 TTC28Q96AY4 2481 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 PRUNE2Q8WUY3 3088 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 HOXA13P31271 388 aaPredicted RBP19.47■□□□□ 0.71
VIM-205ENST00000485947 ARHGAP1Q07960 439 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 SSRP1Q08945 709 aaKnown RBP19.47■□□□□ 0.71
VIM-205ENST00000485947 DGKDQ16760 1214 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 GNPTABQ3T906 1256 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 SRBD1Q8N5C6 995 aaKnown RBP19.47■□□□□ 0.71
VIM-205ENST00000485947 WASF1Q92558 559 aa19.47■□□□□ 0.71
VIM-205ENST00000485947 RNF26Q9BY78 433 aaPredicted RBP19.47■□□□□ 0.71
VIM-205ENST00000485947 ORC3Q9UBD5 711 aaPredicted RBP19.47■□□□□ 0.71
VIM-205ENST00000485947 PPFIA4O75335 1185 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 SYT1P21579 422 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 PTGS1P23219 599 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 LY6KQ17RY6 165 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 LARP1BQ659C4 914 aaKnown RBP19.46■□□□□ 0.71
VIM-205ENST00000485947 PSRC1Q6PGN9 363 aaPredicted RBP19.46■□□□□ 0.71
VIM-205ENST00000485947 SESTD1Q86VW0 696 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 PPTC7Q8NI37 304 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 HIPK3Q9H422 1215 aa19.46■□□□□ 0.71
VIM-205ENST00000485947 hCG_1984214I3L0E3 225 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 STX6O43752 255 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 B4GALT4O60513 344 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 MMP3P08254 477 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 MYCLP12524 364 aaPredicted RBP19.45■□□□□ 0.7
VIM-205ENST00000485947 HOXD8P13378 290 aaPredicted RBP19.45■□□□□ 0.7
VIM-205ENST00000485947 FDPSP14324 419 aaKnown RBP19.45■□□□□ 0.7
VIM-205ENST00000485947 ICAM3P32942 547 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 PSMC6P62333 389 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 C9orf50Q5SZB4 431 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 FCHSD1Q86WN1 690 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 ZNF713Q8N859 430 aaPredicted RBP19.45■□□□□ 0.7
VIM-205ENST00000485947 AFG1LQ8WV93 481 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 COPS5Q92905 334 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 RNPC3Q96LT9 517 aaKnown RBP19.45■□□□□ 0.7
VIM-205ENST00000485947 KATNAL1Q9BW62 490 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 CNTNAP5Q8WYK1 1306 aa19.45■□□□□ 0.7
VIM-205ENST00000485947 TMEM265A0A087WTH1 108 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 PRPF3O43395 683 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 RGS20O76081 388 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 PLEKHA8P1O95397 391 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 DEXIO95424 95 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 BRD1O95696 1058 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 AKAP17AQ02040 695 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 FUT2Q10981 343 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 NBPF20Q3BBV1 942 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 DHX37Q8IY37 1157 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 RPUSD2Q8IZ73 545 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 INPP4AQ96PE3 977 aaPredicted RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 NOC4LQ9BVI4 516 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 SLC26A6Q9BXS9 759 aa19.44■□□□□ 0.7
VIM-205ENST00000485947 MTIF3Q9H2K0 278 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 PSTPIP2Q9H939 334 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms