RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 RDM1Q8NG50 284 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 ETNPPLQ8TBG4 499 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 PXYLP1Q8TE99 480 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 LENG9Q96B70 501 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 MAML3Q96JK9 1138 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 TINF2Q9BSI4 451 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 WDR11Q9BZH6 1224 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 TFIP11Q9UBB9 837 aaKnown RBP9.34□□□□□ -0.91
SYNE1-225ENST00000481502 PCDHA12Q9UN75 941 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 CLIC4Q9Y696 253 aa9.34□□□□□ -0.91
SYNE1-225ENST00000481502 FAM205CA6NFA0 338 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 MARCH6O60337 910 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 COBLO75128 1261 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 TDP2O95551 362 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 CAPN2P17655 700 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 ITGB5P18084 799 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 CMA1P23946 247 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 CNTN2Q02246 1040 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 MTMR1Q13613 665 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 NEDD9Q14511 834 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 PRR16Q569H4 304 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 FOXD4L5Q5VV16 416 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-225ENST00000481502 IQSEC1Q6DN90 963 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 SCFD2Q8WU76 684 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 FOXD4L4Q8WXT5 416 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-225ENST00000481502 SLC5A5Q92911 643 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 FGD4Q96M96 766 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 KCNH7Q9NS40 1196 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 SRRDQ9UH36 339 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 CNPY2Q9Y2B0 182 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 Q9Y3F1 56 aa9.33□□□□□ -0.92
SYNE1-225ENST00000481502 IPO5O00410 1097 aaKnown RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 MSH4O15457 936 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PEX10O60683 326 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 DKC1O60832 514 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PSMD10O75832 226 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 MBD3O95983 291 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PGK2P07205 417 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TAL1P17542 331 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ATP2B1P20020 1258 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 SFNP31947 248 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ME1P48163 572 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 KRT76Q01546 638 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PPP2R5CQ13362 524 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TTLL4Q14679 1199 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 AXDND1Q5T1B0 1012 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 B3GNT9Q6UX72 402 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ARMCX2Q7L311 632 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 SMAP1Q8IYB5 467 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ELOA2Q8IYF1 753 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ERMNQ8TAM6 284 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 NEK9Q8TD19 979 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 HAS1Q92839 578 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 EMID1Q96A84 441 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 CCDC34Q96HJ3 373 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PGBD1Q96JS3 809 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TRIM47Q96LD4 638 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ZNF577Q9BSK1 485 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TEKT3Q9BXF9 490 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 CCSER1Q9C0I3 900 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TTC12Q9H892 705 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 FAM13BQ9NYF5 915 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 USP25Q9UHP3 1055 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 TCEAL9Q9UHQ7 104 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 FBXO2Q9UK22 296 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 PCDHA7Q9UN72 937 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 MYH7BA7E2Y1 1941 aa9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ZNFX1Q9P2E3 1918 aaKnown RBP9.32□□□□□ -0.92
SYNE1-225ENST00000481502 ASTN1O14525 1302 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 MYH15Q9Y2K3 1946 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 DHX15O43143 795 aaKnown RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 SLC37A4O43826 429 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 RGS20O76081 388 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 MYCLP12524 364 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 TXLNAP40222 546 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 FLT3LGP49771 235 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 JAK3P52333 1124 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 HTRA3P83110 453 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 MFSD14CQ5VZR4 134 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 HAUS3Q68CZ6 603 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 ZNF746Q6NUN9 644 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 CCDC62Q6P9F0 684 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 OTOP1Q7RTM1 612 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 IL31RAQ8NI17 732 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 ZNF296Q8WUU4 475 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 SDF4Q9BRK5 362 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 NT5C3AQ9H0P0 336 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 TMEM60Q9H2L4 133 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 R3HDMLQ9H3Y0 253 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 CUEDC2Q9H467 287 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 AGO4Q9HCK5 861 aaKnown RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 LMBRD1Q9NUN5 540 aa9.31□□□□□ -0.92
SYNE1-225ENST00000481502 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-225ENST00000481502 CASP8AP2Q9UKL3 1982 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 WNT7AO00755 349 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 GAS7O60861 476 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 PRPF40AO75400 957 aaKnown RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 ATG7O95352 703 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 SNAI1O95863 264 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 XRCC6P12956 609 aaKnown RBP eCLIP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms