RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TOB1P50616 345 aaPredicted RBP16.05■□□□□ 0.16
HDAC6-220ENST00000477528 ADGRF4Q8IZF3 695 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 TESPA1A2RU30 521 aaPredicted RBP16.05■□□□□ 0.16
HDAC6-220ENST00000477528 ABCB4P21439 1286 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 KLRK1P26718 216 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 CACNB3P54284 484 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 GRIPAP1Q4V328 841 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 ARHGEF16Q5VV41 709 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 CCDC91Q7Z6B0 441 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 CCDC25Q86WR0 208 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 FAM186BQ8IYM0 893 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 SELENOSQ9BQE4 189 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 AS3MTQ9HBK9 375 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 DAGLAQ9Y4D2 1042 aa16.05■□□□□ 0.16
HDAC6-220ENST00000477528 TTC26A0AVF1 554 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 ATP2A1O14983 1001 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 EHHADHQ08426 723 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 MTMR3Q13615 1198 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 LIN9Q5TKA1 542 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 ADSSL1Q8N142 457 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 GUF1Q8N442 669 aaKnown RBP16.04■□□□□ 0.16
HDAC6-220ENST00000477528 MTMR4Q9NYA4 1195 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 PNMA6AP0CW24 399 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-220ENST00000477528 PPP4CP60510 307 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 XKR9Q5GH70 373 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 FAM102BQ5T8I3 360 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 TRIM31Q9BZY9 425 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 XRN1Q8IZH2 1706 aaKnown RBP16.04■□□□□ 0.16
HDAC6-220ENST00000477528 TDP2O95551 362 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 PPP2R5EQ16537 467 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 ITIH6Q6UXX5 1313 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 TRIM9Q9C026 710 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 RNF14Q9UBS8 474 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 TOPAZ1Q8N9V7 1692 aa16.04■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L15C9J2P7 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L13C9JLJ4 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L11C9JVI0 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L18D6R9N7 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L22D6RA61 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L17D6RBQ6 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L19D6RCP7 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L20D6RJB6 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 STXBP3O00186 592 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 HARSP12081 509 aaKnown RBP16.03■□□□□ 0.16
HDAC6-220ENST00000477528 UBXN2AP68543 259 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L24Q0WX57 530 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 USP17L6PQ6QN14 398 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 MSANTD4Q8NCY6 345 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 KIF4AO95239 1232 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 GH2P01242 217 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 DMTNQ08495 405 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 ZRSR2Q15696 482 aaKnown RBP16.03■□□□□ 0.16
HDAC6-220ENST00000477528 ADGRA1Q86SQ6 560 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 CEP63Q96MT8 703 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 KRIT1O00522 736 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 HPDP32754 393 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-220ENST00000477528 PLCB3Q01970 1234 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 PDIA5Q14554 519 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 RCSD1Q6JBY9 416 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 NYAP1Q6ZVC0 841 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 TC2NQ8N9U0 490 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 CCDC114Q96M63 670 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 RAB17Q9H0T7 212 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 FAM208AQ9UK61 1670 aaKnown RBP16.03■□□□□ 0.16
HDAC6-220ENST00000477528 A0A1W2PRG0 241 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 SMIM23A6NLE4 172 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 MOCS3O95396 460 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 DCAF15Q66K64 600 aa16.03■□□□□ 0.16
HDAC6-220ENST00000477528 MKRN1Q9UHC7 482 aaKnown RBP16.03■□□□□ 0.16
HDAC6-220ENST00000477528 RHOBTB3O94955 611 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 LMNB1P20700 586 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 GNPTABQ3T906 1256 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 FAM160B2Q86V87 743 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 OTUD6BQ8N6M0 293 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 FAM133AQ8N9E0 248 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 HOXA13P31271 388 aaPredicted RBP16.02■□□□□ 0.16
HDAC6-220ENST00000477528 COASYQ13057 564 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 QRICH1Q2TAL8 776 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 CPLX4Q7Z7G2 160 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 PARVGQ9HBI0 331 aa16.02■□□□□ 0.16
HDAC6-220ENST00000477528 GPR75-ASB3A0A0A6YYF3 556 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 NDUFAB1O14561 156 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 SMARCA1P28370 1054 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 MYL7Q01449 175 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 MTF1Q14872 753 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 C10orf76Q5T2E6 689 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 BHMT2Q9H2M3 363 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 MRFAP1Q9Y605 127 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 RIC1Q4ADV7 1423 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 CAMTA1Q9Y6Y1 1673 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 RGPD8O14715 1765 aaPredicted RBP16.02■□□□□ 0.15
HDAC6-220ENST00000477528 CTIFO43310 598 aaKnown RBP16.02■□□□□ 0.15
HDAC6-220ENST00000477528 FAM20AQ96MK3 541 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 SLC4A9Q96Q91 983 aa16.02■□□□□ 0.15
HDAC6-220ENST00000477528 GOLGA8KD6RF30 607 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CLIC2O15247 247 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ARHGAP4P98171 946 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 B4GALNT4Q76KP1 1039 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CROCCP2Q86T23 111 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ANKS4BQ8N8V4 417 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms