RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PPFIA4O75335 1185 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 FAM117BQ6P1L5 589 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 PNMA1Q8ND90 353 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.7□□□□□ -0.06
SKA3-206ENST00000475251 FAM227BQ96M60 508 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 KAT14Q9H8E8 782 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 CD320Q9NPF0 282 aa14.7□□□□□ -0.06
SKA3-206ENST00000475251 MAP3K20Q9NYL2 800 aaKnown RBP14.7□□□□□ -0.06
SKA3-206ENST00000475251 CCDC171Q6TFL3 1326 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 A0A0D9SFI3 127 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 RSPH10B2B2RC85 870 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 NR3C2P08235 984 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 RSPH10BP0C881 870 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 ZNF286BP0CG31 522 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 EIF2AK2P19525 551 aaKnown RBP14.69□□□□□ -0.06
SKA3-206ENST00000475251 HTRA4P83105 476 aaPredicted RBP14.69□□□□□ -0.06
SKA3-206ENST00000475251 TRIM71Q2Q1W2 868 aaKnown RBP14.69□□□□□ -0.06
SKA3-206ENST00000475251 FBXO11Q86XK2 927 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 ADGRF4Q8IZF3 695 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 MYOCDQ8IZQ8 938 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 SPDYE1Q8NFV5 336 aaPredicted RBP14.69□□□□□ -0.06
SKA3-206ENST00000475251 TBC1D5Q92609 795 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 PXMP2Q9NR77 195 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 COL20A1Q9P218 1284 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 PCDHB15Q9Y5E8 787 aa14.69□□□□□ -0.06
SKA3-206ENST00000475251 GRXCR2A6NFK2 248 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 ZNF213O14771 459 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 CAND2O75155 1236 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 CFBP00751 764 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 PARP1P09874 1014 aaKnown RBP14.68□□□□□ -0.06
SKA3-206ENST00000475251 HOXD8P13378 290 aaPredicted RBP14.68□□□□□ -0.06
SKA3-206ENST00000475251 IL9P15248 144 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 THPOP40225 353 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 PDE1AP54750 535 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 QRICH1Q2TAL8 776 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 ANKRD45Q5TZF3 282 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 TRAF7Q6Q0C0 670 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 TBC1D10CQ8IV04 446 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 SAMD3Q8N6K7 520 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 DBF4BQ8NFT6 615 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 NEK9Q8TD19 979 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 SP7Q8TDD2 431 aaPredicted RBP14.68□□□□□ -0.06
SKA3-206ENST00000475251 SEPT8Q92599 483 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 ZKSCAN3Q9BRR0 538 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 C17orf80Q9BSJ5 609 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 KCNH6Q9H252 994 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 CPVLQ9H3G5 476 aa14.68□□□□□ -0.06
SKA3-206ENST00000475251 TGFB3P10600 412 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 TRAF1Q13077 416 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 NMIQ13287 307 aaPredicted RBP14.67□□□□□ -0.06
SKA3-206ENST00000475251 MBTPS1Q14703 1052 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 TCTN1Q2MV58 587 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 EPC2Q52LR7 807 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.67□□□□□ -0.06
SKA3-206ENST00000475251 ZNF589Q86UQ0 364 aaPredicted RBP14.67□□□□□ -0.06
SKA3-206ENST00000475251 SERINC5Q86VE9 423 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 BANK1Q8NDB2 785 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 ANKS1AQ92625 1134 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 PABPC5Q96DU9 382 aaKnown RBP14.67□□□□□ -0.06
SKA3-206ENST00000475251 SPATA33Q96N06 139 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 UIMC1Q96RL1 719 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 YME1L1Q96TA2 773 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 AMNQ9BXJ7 453 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 PRKAG3Q9UGI9 489 aa14.67□□□□□ -0.06
SKA3-206ENST00000475251 NEDD4P46934 1319 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 COL4A6Q14031 1691 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 C17orf102A2RUQ5 167 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 TRIM6-TRIM34B2RNG4 842 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 H3BNC9 293 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 DCXO43602 365 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 NCK2O43639 380 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 HSD17B4P51659 736 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 GHRHRQ02643 423 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 PLEKHG4Q58EX7 1191 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 CELF3Q5SZQ8 465 aaKnown RBP14.66□□□□□ -0.06
SKA3-206ENST00000475251 MYSM1Q5VVJ2 828 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 APBB2Q92870 758 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 ATP6V0A1Q93050 837 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 WNT8BQ93098 351 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 ZSCAN10Q96SZ4 725 aaPredicted RBP14.66□□□□□ -0.06
SKA3-206ENST00000475251 NSUN3Q9H649 340 aaKnown RBP14.66□□□□□ -0.06
SKA3-206ENST00000475251 MICAL3Q7RTP6 2002 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 MYH6P13533 1939 aa14.66□□□□□ -0.06
SKA3-206ENST00000475251 KDM4AO75164 1064 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 GGPS1O95749 300 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 GNAT1P11488 350 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 MYCLP12524 364 aaPredicted RBP14.65□□□□□ -0.06
SKA3-206ENST00000475251 ZNF200P98182 395 aaPredicted RBP14.65□□□□□ -0.06
SKA3-206ENST00000475251 GPM6BQ13491 265 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 HSDL1Q3SXM5 330 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 ALYREFQ86V81 257 aaKnown RBP14.65□□□□□ -0.06
SKA3-206ENST00000475251 TOP1MTQ969P6 601 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 PDCD2LQ9BRP1 358 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 UPF3BQ9BZI7 483 aaKnown RBP14.65□□□□□ -0.06
SKA3-206ENST00000475251 JMJD4Q9H9V9 463 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 MLXIPQ9HAP2 919 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 VAT1LQ9HCJ6 419 aa14.65□□□□□ -0.06
SKA3-206ENST00000475251 MYH7BA7E2Y1 1941 aa14.64□□□□□ -0.07
SKA3-206ENST00000475251 H3BQ06 376 aaPredicted RBP14.64□□□□□ -0.07
SKA3-206ENST00000475251 H3BRB1 525 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms