RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	VSIG10L	Q86VR7	867 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	MAFA	Q8NHW3	353 aa	Predicted RBP	13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	PPP1R13L	Q8WUF5	828 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	MYLIP	Q8WY64	445 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	KATNAL1	Q9BW62	490 aa		13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373	DDX41	Q9UJV9	622 aa	Known RBP	13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373		V9GY48	417 aa	Predicted RBP	13.23	□□□□□ -0.29
CPNE1-222	ENST00000473373		A6NJR5	290 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	CPLX1	O14810	134 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	EPB41L2	O43491	1005 aa	Known RBP	13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	ZNF286B	P0CG31	522 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	CYP2C18	P33260	490 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	GHRHR	Q02643	423 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	C1QBP	Q07021	282 aa	Known RBP	13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	ARHGAP1	Q07960	439 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	RUFY3	Q7L099	469 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	C7orf31	Q8N865	590 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	TRPV6	Q9H1D0	765 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	TANC1	Q9C0D5	1861 aa		13.22	□□□□□ -0.29
CPNE1-222	ENST00000473373	GBF1	Q92538	1859 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	hCG_1984214	I3L0E3	225 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PIK3CD	O00329	1044 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	FIBP	O43427	364 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	TGFB3	P10600	412 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	UBA1	P22314	1058 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	ITGB8	P26012	769 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CDC27	P30260	824 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	ZNF76	P36508	570 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	RCAN1	P53805	252 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCL23	P55773	120 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCT2	P78371	535 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	NEDD9	Q14511	834 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CELF3	Q5SZQ8	465 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PCNX4	Q63HM2	1172 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	WWC2	Q6AWC2	1192 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	MFSD5	Q6N075	450 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PPP1R18	Q6NYC8	613 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CPLX2	Q6PUV4	134 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	CCDC155	Q8N6L0	562 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	ZNF713	Q8N859	430 aa	Predicted RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	RETREG2	Q8NC44	543 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PPTC7	Q8NI37	304 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	MTIF3	Q9H2K0	278 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	TTYH1	Q9H313	450 aa	Predicted RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	TRMT13	Q9NUP7	481 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PKD2L1	Q9P0L9	805 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	TBX21	Q9UL17	535 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PCDHA6	Q9UN73	950 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	PCDHA8	Q9Y5H6	950 aa		13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	MYH9	P35579	1960 aa	Known RBP	13.21	□□□□□ -0.29
CPNE1-222	ENST00000473373	LAMA2	P24043	3122 aa	Known RBP	13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	SMCO2	A6NFE2	343 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	MEIS2	O14770	477 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	ACR	P10323	421 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	CYP2C9	P11712	490 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	CSF2RA	P15509	400 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	ADD1	P35611	737 aa	Known RBP	13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	STK3	Q13188	491 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	PTGIS	Q16647	500 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	XRRA1	Q6P2D8	792 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	NFRKB	Q6P4R8	1299 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	CYFIP1	Q7L576	1253 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	TRIM22	Q8IYM9	498 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	KCNB2	Q92953	911 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	CDHR1	Q96JP9	859 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	SLC26A6	Q9BXS9	759 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	USP26	Q9BXU7	913 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	UPF3B	Q9BZI7	483 aa	Known RBP	13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	GLT8D2	Q9H1C3	349 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	PDRG1	Q9NUG6	133 aa		13.2	□□□□□ -0.3
CPNE1-222	ENST00000473373	GRIN2D	O15399	1336 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	ZBBX	A8MT70	800 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PPFIA3	O75145	1194 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	CD4	P01730	458 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	SCG2	P13521	617 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PSEN2	P49810	448 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PTPN11	Q06124	597 aa	Predicted RBP	13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	BFSP2	Q13515	415 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	MFSD10	Q14728	455 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	KIAA0753	Q2KHM9	967 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	UTP14C	Q5TAP6	766 aa	Known RBP	13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	MYSM1	Q5VVJ2	828 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	RPUSD2	Q8IZ73	545 aa	Known RBP	13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	SLC43A3	Q8NBI5	491 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PHKB	Q93100	1093 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	PGBD1	Q96JS3	809 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	C6orf50	Q9HD87	102 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	RIC8A	Q9NPQ8	531 aa		13.19	□□□□□ -0.3
CPNE1-222	ENST00000473373	FRMPD4	Q14CM0	1322 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	STXBP3	O00186	592 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	PPFIA4	O75335	1185 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	RGS20	O76081	388 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	FOS	P01100	380 aa	Predicted RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	FOSL2	P15408	326 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	EPHB4	P54760	987 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	MRPS9	P82933	396 aa	Known RBP	13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms