RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 GUCY1A2P33402 732 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 TRDNQ13061 729 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PRKG1Q13976 671 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 RABEP1Q15276 862 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 RCSD1Q6JBY9 416 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 MOB2Q70IA6 237 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CDC37L1Q7L3B6 337 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 RALYLQ86SE5 291 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 LDHDQ86WU2 507 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 IGDCC4Q8TDY8 1250 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 ESR2Q92731 530 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CDCA5Q96FF9 252 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 AGXT2Q9BYV1 514 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 KRT23Q9C075 422 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 NIF3L1Q9GZT8 377 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CNNM2Q9H8M5 875 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 BRD7Q9NPI1 651 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 SWAP70Q9UH65 585 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 HERC5Q9UII4 1024 aaKnown RBP5.55□□□□□ -1.52
SF3B1-208ENST00000470268 PPP2R3BQ9Y5P8 575 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 CYP46A1Q9Y6A2 500 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 LAMA4Q16363 1823 aa5.55□□□□□ -1.52
SF3B1-208ENST00000470268 LAMB1P07942 1786 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 IGKV6D-41A0A0C4DH26 115 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 TSPY2A6NKD2 308 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 EFSO43281 561 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 LARGE1O95461 756 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 HMGB1P09429 215 aaKnown RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 GRNP28799 593 aaKnown RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 MCM5P33992 734 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 AK2P54819 239 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 LAMC2Q13753 1193 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 SEC23AQ15436 765 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 TRIP4Q15650 581 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 ENOX2Q16206 610 aaKnown RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 CERKLQ49MI3 558 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 Q6ZUG5 572 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 CHSY3Q70JA7 882 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 NOL8Q76FK4 1167 aaKnown RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 CCDC84Q86UT8 332 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 SIAH1Q8IUQ4 282 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 ZNF444Q8N0Y2 327 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 CMTR1Q8N1G2 835 aaKnown RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 ENAHQ8N8S7 591 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-208ENST00000470268 CEP95Q96GE4 821 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 DNAJC25Q9H1X3 360 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 PDRG1Q9NUG6 133 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 ZNF112Q9UJU3 913 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 MYH1P12882 1939 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 TNKSO95271 1327 aa5.54□□□□□ -1.52
SF3B1-208ENST00000470268 PLIN4Q96Q06 1357 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SH2B2O14492 632 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ATXN7O15265 892 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 DTNBO60941 627 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 USP2O75604 605 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 GH2P01242 217 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TSPY3P0CV98 308 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TSPY8P0CW00 308 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 VAMP1P23763 118 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 YY1P25490 414 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 CAP2P40123 477 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 GATA4P43694 442 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 MAPK8P45983 427 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 NOVP48745 357 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SEPT2Q15019 361 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 RASGRP2Q7LDG7 609 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 FBXL16Q8N461 479 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 BRF1Q92994 677 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ZKSCAN4Q969J2 545 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SEMA6BQ9H3T3 888 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 LY9Q9HBG7 655 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TPCN1Q9ULQ1 816 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 USP20Q9Y2K6 914 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 WDR19Q8NEZ3 1342 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 A0A1W2PRG0 241 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SPDYE3A6NKU9 549 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 MPHOSPH10O00566 681 aaKnown RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 IFIT3O14879 490 aaKnown RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 PRPF40AO75400 957 aaKnown RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 LIFRP42702 1097 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 CHRNA4P43681 627 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 APOBRQ0VD83 1088 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ST3GAL1Q11201 340 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ABCB5Q2M3G0 1257 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SUPT20HL1Q3ZLR7 823 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TMEM67Q5HYA8 995 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 CST9Q5W186 159 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 IQCA1Q86XH1 822 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 RAB11FIP4Q86YS3 637 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 MRRFQ96E11 262 aaKnown RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TMEM87BQ96K49 555 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 CCDC17Q96LX7 622 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 WRNIP1Q96S55 665 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 MYL10Q9BUA6 226 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ALDH8A1Q9H2A2 487 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 SLKQ9H2G2 1235 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ZNF287Q9HBT7 754 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 TCP11L1Q9NUJ3 509 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms