RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ATP2B1P20020 1258 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 CNGA1P29973 690 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 ZNF76P36508 570 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 USP11P51784 963 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 SP2Q02086 613 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 LY6KQ17RY6 165 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 CCDC62Q6P9F0 684 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 MBOAT7Q96N66 472 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL9A3-209ENST00000469852 JADE2Q9NQC1 790 aa16.82■□□□□ 0.28
COL9A3-209ENST00000469852 CYP3A7-CYP3A51PA0A087WV96 503 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 SPATA31C2B4DYI2 1134 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 SEPT4O43236 478 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 SORBS3O60504 671 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 CCNT1O60563 726 aaKnown RBP16.81■□□□□ 0.28
COL9A3-209ENST00000469852 ATP9AO75110 1047 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 STAM2O75886 525 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 ZSCAN22P10073 491 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-209ENST00000469852 CYP3A7P24462 503 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 ICAM3P32942 547 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 IRX5P78411 483 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-209ENST00000469852 MTMR1Q13613 665 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 PRR16Q569H4 304 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 PLA2G4DQ86XP0 818 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 SCFD2Q8WU76 684 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 GJA10Q969M2 543 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 GPRASP2Q96D09 838 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 HMX1Q9NP08 348 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-209ENST00000469852 KCNH7Q9NS40 1196 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 PKD2L1Q9P0L9 805 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 DDX41Q9UJV9 622 aaKnown RBP16.81■□□□□ 0.28
COL9A3-209ENST00000469852 TELO2Q9Y4R8 837 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 MRVI1Q9Y6F6 885 aa16.81■□□□□ 0.28
COL9A3-209ENST00000469852 FIBPO43427 364 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 BRD1O95696 1058 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 TXNP10599 105 aaKnown RBP16.8■□□□□ 0.28
COL9A3-209ENST00000469852 AKR1A1P14550 325 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 UBA1P22314 1058 aaKnown RBP16.8■□□□□ 0.28
COL9A3-209ENST00000469852 TNFAIP2Q03169 654 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 MYSM1Q5VVJ2 828 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 LHX8Q68G74 356 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 NLRX1Q86UT6 975 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 POTEDQ86YR6 584 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 PAK6Q9NQU5 681 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-209ENST00000469852 FAM184BQ9ULE4 1060 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 GNEQ9Y223 722 aaKnown RBP16.8■□□□□ 0.28
COL9A3-209ENST00000469852 PCDHB6Q9Y5E3 794 aa16.8■□□□□ 0.28
COL9A3-209ENST00000469852 MSH4O15457 936 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 F13A1P00488 732 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 KCNA2P16389 499 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 ITGB3BPQ13352 177 aaPredicted RBP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 TTLL4Q14679 1199 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 ZNF174Q15697 407 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 GNPTABQ3T906 1256 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 Q4G0T1 1027 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 DUSP28Q4G0W2 176 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 TTC38Q5R3I4 469 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 IQSEC1Q6DN90 963 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 PPP4R3AQ6IN85 833 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 MOXD1Q6UVY6 613 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 NIPA1Q7RTP0 329 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 BRAPQ7Z569 592 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 IPO9Q96P70 1041 aaKnown RBP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 FTOQ9C0B1 505 aaKnown RBP eCLIP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 RNF208Q9H0X6 261 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 AGO4Q9HCK5 861 aaKnown RBP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 PCDH10Q9P2E7 1040 aa16.79■□□□□ 0.28
COL9A3-209ENST00000469852 DDX20Q9UHI6 824 aaKnown RBP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 DDX25Q9UHL0 483 aaKnown RBP16.79■□□□□ 0.28
COL9A3-209ENST00000469852 MCM7P33993 719 aa16.78■□□□□ 0.28
COL9A3-209ENST00000469852 ETNPPLQ8TBG4 499 aa16.78■□□□□ 0.28
COL9A3-209ENST00000469852 CHAMP1Q96JM3 812 aa16.78■□□□□ 0.28
COL9A3-209ENST00000469852 TMEM60Q9H2L4 133 aa16.78■□□□□ 0.28
COL9A3-209ENST00000469852 DAXXQ9UER7 740 aaPredicted RBP16.78■□□□□ 0.28
COL9A3-209ENST00000469852 NOL7Q9UMY1 257 aaKnown RBP16.78■□□□□ 0.28
COL9A3-209ENST00000469852 SYNRGQ9UMZ2 1314 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 MYADML2A6NDP7 307 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 DHX15O43143 795 aaKnown RBP16.77■□□□□ 0.28
COL9A3-209ENST00000469852 GGPS1O95749 300 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 GCFC2P16383 781 aaKnown RBP16.77■□□□□ 0.28
COL9A3-209ENST00000469852 TRAPPC10P48553 1259 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 SETQ01105 290 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-209ENST00000469852 ARHGAP1Q07960 439 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 FOXD4L6Q3SYB3 417 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-209ENST00000469852 FOXD4L3Q6VB84 417 aaPredicted RBP16.77■□□□□ 0.28
COL9A3-209ENST00000469852 HAS1Q92839 578 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 DEFB118Q96PH6 123 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 KCNMB3Q9NPA1 279 aa16.77■□□□□ 0.28
COL9A3-209ENST00000469852 CTAGE5O15320 804 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 DUSP11O75319 330 aaKnown RBP16.76■□□□□ 0.27
COL9A3-209ENST00000469852 PGK1P00558 417 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 TGFB3P10600 412 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 RILPL1Q5EBL4 403 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 CELF3Q5SZQ8 465 aaKnown RBP16.76■□□□□ 0.27
COL9A3-209ENST00000469852 KCNV1Q6PIU1 500 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 CYFIP1Q7L576 1253 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 TLK2Q86UE8 772 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 C4orf32Q8N8J7 132 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 ZNF577Q9BSK1 485 aa16.76■□□□□ 0.27
COL9A3-209ENST00000469852 ZSCAN16Q9H4T2 348 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms