RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TRANK1O15050 2925 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 ACTN1P12814 892 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 UBA1P22314 1058 aaKnown RBP28.34■■■□□ 2.13
PTCH1-210ENST00000468211 CCND2P30279 289 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 HIC1Q14526 733 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 PPP2R2DQ66LE6 453 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 ZNF654Q8IZM8 581 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 C7orf31Q8N865 590 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 CAGE1Q8TC20 777 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 SPATA33Q96N06 139 aa28.34■■■□□ 2.13
PTCH1-210ENST00000468211 ZNF200P98182 395 aaPredicted RBP28.33■■■□□ 2.13
PTCH1-210ENST00000468211 TRAF1Q13077 416 aa28.33■■■□□ 2.13
PTCH1-210ENST00000468211 SKAP1Q86WV1 359 aa28.33■■■□□ 2.13
PTCH1-210ENST00000468211 AFAP1L1Q8TED9 768 aa28.33■■■□□ 2.13
PTCH1-210ENST00000468211 WNT8BQ93098 351 aa28.33■■■□□ 2.13
PTCH1-210ENST00000468211 PRC1O43663 620 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 IGFBP4P22692 258 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 MRPS9P82933 396 aaKnown RBP28.32■■■□□ 2.12
PTCH1-210ENST00000468211 RBL2Q08999 1139 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 KCNV1Q6PIU1 500 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 LRRC8DQ7L1W4 858 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 FRMPD4Q14CM0 1322 aa28.32■■■□□ 2.12
PTCH1-210ENST00000468211 PPFIA4O75335 1185 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 ARHGEF15O94989 841 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 CA3P07451 260 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 CKBP12277 381 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 SELPP16109 830 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 CCDC85BQ15834 202 aaPredicted RBP28.31■■■□□ 2.12
PTCH1-210ENST00000468211 TCTN1Q2MV58 587 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 CCDC155Q8N6L0 562 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 MAP3K14Q99558 947 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 ESYT1Q9BSJ8 1104 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 C16orf70Q9BSU1 422 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 KATNAL1Q9BW62 490 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 SPZ1Q9BXG8 430 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 TTC28Q96AY4 2481 aa28.31■■■□□ 2.12
PTCH1-210ENST00000468211 SH2B2O14492 632 aaPredicted RBP28.3■■■□□ 2.12
PTCH1-210ENST00000468211 SLC27A2O14975 620 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 NBNO60934 754 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 DDAH1O94760 285 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 PLEKHA8P1O95397 391 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 TGFB3P10600 412 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 TRIM71Q2Q1W2 868 aaKnown RBP28.3■■■□□ 2.12
PTCH1-210ENST00000468211 SLC9A7Q96T83 725 aa28.3■■■□□ 2.12
PTCH1-210ENST00000468211 RXRAP19793 462 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 SEMA3FQ13275 785 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 TRAF7Q6Q0C0 670 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 USP17L6PQ6QN14 398 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 CASC1Q6TDU7 716 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 HERC6Q8IVU3 1022 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 CMTR1Q8N1G2 835 aaKnown RBP28.29■■■□□ 2.12
PTCH1-210ENST00000468211 SRBD1Q8N5C6 995 aaKnown RBP28.29■■■□□ 2.12
PTCH1-210ENST00000468211 CTCFLQ8NI51 663 aaPredicted RBP28.29■■■□□ 2.12
PTCH1-210ENST00000468211 PHOSPHO2Q8TCD6 241 aa28.29■■■□□ 2.12
PTCH1-210ENST00000468211 RFXAPO00287 272 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 PTK7Q13308 1070 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 TMCO2Q7Z6W1 182 aaPredicted RBP28.28■■■□□ 2.12
PTCH1-210ENST00000468211 RAB11FIP4Q86YS3 637 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 RRP36Q96EU6 259 aaKnown RBP28.28■■■□□ 2.12
PTCH1-210ENST00000468211 INPP4AQ96PE3 977 aaPredicted RBP28.28■■■□□ 2.12
PTCH1-210ENST00000468211 CERS4Q9HA82 394 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 MLXIPQ9HAP2 919 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 RTEL1Q9NZ71 1219 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 TELO2Q9Y4R8 837 aa28.28■■■□□ 2.12
PTCH1-210ENST00000468211 PRRC2BQ5JSZ5 2229 aaKnown RBP28.27■■■□□ 2.12
PTCH1-210ENST00000468211 EPOPA6NHQ4 379 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 BAIAP3O94812 1187 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 MCM5P33992 734 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 NECTIN1Q15223 517 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 CREB3L3Q68CJ9 461 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 MTA3Q9BTC8 594 aa28.27■■■□□ 2.12
PTCH1-210ENST00000468211 SPATA31C2B4DYI2 1134 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 MEIS2O14770 477 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 CXCL10P02778 98 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 SMARCA1P28370 1054 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 ICAM3P32942 547 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 KIF5BP33176 963 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 WDR5P61964 334 aaKnown RBP28.26■■■□□ 2.11
PTCH1-210ENST00000468211 MBTPS1Q14703 1052 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 ZNF618Q5T7W0 954 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 NFXL1Q6ZNB6 911 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 SPRED2Q7Z698 418 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 TMEM87BQ96K49 555 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 LRRC2Q9BYS8 371 aa28.26■■■□□ 2.11
PTCH1-210ENST00000468211 DEFB103AP81534 67 aa28.25■■■□□ 2.11
PTCH1-210ENST00000468211 TAP1Q03518 808 aa28.25■■■□□ 2.11
PTCH1-210ENST00000468211 hCG_1642624A0A1W2PR95 340 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 CCDC69A6NI79 296 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 LGALS2P05162 132 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 TJAP1Q5JTD0 557 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 CYFIP1Q7L576 1253 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 SMARCC2Q8TAQ2 1214 aa28.24■■■□□ 2.11
PTCH1-210ENST00000468211 H3BRB1 525 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 KCNJ6P48051 423 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 GNPTABQ3T906 1256 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 CNKSR3Q6P9H4 555 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 TMTC2Q8N394 836 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 LZTS2Q9BRK4 669 aa28.23■■■□□ 2.11
PTCH1-210ENST00000468211 TUT1Q9H6E5 874 aaKnown RBP28.23■■■□□ 2.11
PTCH1-210ENST00000468211 ANO2Q9NQ90 1003 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms