RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	PRLR	P16471	622 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ARSH	Q5FYA8	562 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	KLHL10	Q6JEL2	608 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZNF771	Q7L3S4	317 aa	Predicted RBP	9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	NOA1	Q8NC60	698 aa	Known RBP	9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	OR8K1	Q8NGG5	319 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	TMEM174	Q8WUU8	243 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	PRMT6	Q96LA8	375 aa	Predicted RBP	9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	TUBGCP2	Q9BSJ2	902 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZNF112	Q9UJU3	913 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	TDP2	O95551	362 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	HIRA	P54198	1017 aa	Predicted RBP	9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZBED6	P86452	979 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ADGRF4	Q8IZF3	695 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	GOLGA1	Q92805	767 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	EXOC1	Q9NV70	894 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	SALL4	Q9UJQ4	1053 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	PITPNM2	Q9BZ72	1349 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	PNMA6F	A0A0J9YX94	578 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	PDE2A	O00408	941 aa	Predicted RBP	9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	MEIS2	O14770	477 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	TLR2	O60603	784 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	LMNB1	P20700	586 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	SLC12A3	P55017	1021 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	NFIA	Q12857	509 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	HEATR3	Q7Z4Q2	680 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	FAM83A	Q86UY5	434 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	GPC2	Q8N158	579 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	IQCD	Q96DY2	449 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	BORCS6	Q96GS4	357 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912		B4DLN1	442 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	PRPF6	O94906	941 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	KRT9	P35527	623 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	CREG2	Q8IUH2	290 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	TEX11	Q8IYF3	940 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	CNOT6L	Q96LI5	555 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	ANO9	A1A5B4	782 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	TARSL2	A2RTX5	802 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	GNA11	P29992	359 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	CHMP4BP1	P59074	171 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	PSMD2	Q13200	908 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	HPS3	Q969F9	1004 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	HAUS4	Q9H6D7	363 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	LZTFL1	Q9NQ48	299 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	TFR2	Q9UP52	801 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCDC194	A0A1B0GVG4	234 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	N4BP3	O15049	544 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCNT1	O60563	726 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	RPS6KA5	O75582	802 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	ATP1A1	P05023	1023 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	UBXN1	Q04323	297 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	LONRF2	Q1L5Z9	754 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	JAKMIP3	Q5VZ66	844 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	B3GNT9	Q6UX72	402 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	BTNL9	Q6UXG8	535 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	UBXN4	Q92575	508 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	SYN2	Q92777	582 aa	Predicted RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	RRP36	Q96EU6	259 aa	Known RBP	9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	NUP58	Q9BVL2	599 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	EDEM3	Q9BZQ6	932 aa		9.78	□□□□□ -0.84
SYNE1-215	ENST00000460912	TULP2	O00295	520 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	NRDC	O43847	1150 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	VSNL1	P62760	191 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	LRRC63	Q05C16	580 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	SHROOM1	Q2M3G4	852 aa	Predicted RBP	9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	PPFIBP1	Q86W92	1011 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	HOMER1	Q86YM7	354 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	REXO1	Q8N1G1	1221 aa	Known RBP	9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	CEP112	Q8N8E3	955 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCDC12	Q8WUD4	166 aa	Predicted RBP	9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	NAPG	Q99747	312 aa	Predicted RBP	9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	MKNK2	Q9HBH9	465 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	C6orf50	Q9HD87	102 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	SYNPO2	Q9UMS6	1093 aa		9.77	□□□□□ -0.84
SYNE1-215	ENST00000460912	DDTL	A6NHG4	134 aa	Predicted RBP	9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	TNFRSF8	P28908	595 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	SEPT2	Q15019	361 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	BMT2	Q1RMZ1	405 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912		Q4G0T1	1027 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	VWA3B	Q502W6	1294 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZNF444	Q8N0Y2	327 aa	Predicted RBP	9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	GMCL1P1	Q8NEA9	526 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	CCDC34	Q96HJ3	373 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZNF287	Q9HBT7	754 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	MAPK8IP1	Q9UQF2	711 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZMYM2	Q9UBW7	1377 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	WNT10B	O00744	389 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	MYB	P10242	640 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	TEC	P42680	631 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	USP14	P54578	494 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	SLC4A8	Q2Y0W8	1093 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	FILIP1L	Q4L180	1135 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	TEKT1	Q969V4	418 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	DEFB129	Q9H1M3	183 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	GAN	Q9H2C0	597 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	SH2D4A	Q9H788	454 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	VIPAS39	Q9H9C1	493 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	GPRC5D	Q9NZD1	345 aa		9.77	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZNF70	Q9UC06	446 aa	Predicted RBP	9.77	□□□□□ -0.85

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