RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SEMA3FQ13275 785 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 PTGISQ16647 500 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 RNF20Q5VTR2 975 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 DEFB128Q7Z7B8 93 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 SPATA33Q96N06 139 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 ALG1Q9BT22 464 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 ZNF576Q9H609 170 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 PIK3CDO00329 1044 aa23.94■■□□□ 1.42
SDC1-205ENST00000447124 PPFIA4O75335 1185 aa23.94■■□□□ 1.42
SDC1-205ENST00000447124 ZNF286BP0CG31 522 aa23.94■■□□□ 1.42
SDC1-205ENST00000447124 TMTC3Q6ZXV5 915 aa23.94■■□□□ 1.42
SDC1-205ENST00000447124 DHX38Q92620 1227 aaKnown RBP23.94■■□□□ 1.42
SDC1-205ENST00000447124 SEC63Q9UGP8 760 aaKnown RBP23.94■■□□□ 1.42
SDC1-205ENST00000447124 BRPF3Q9ULD4 1205 aa23.94■■□□□ 1.42
SDC1-205ENST00000447124 SPATA31C2B4DYI2 1134 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 RBAK-RBAKDNI3L0D1 243 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 PITPNM1O00562 1244 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 F2P00734 622 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 ICAM3P32942 547 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 HIC1Q14526 733 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 MFSD10Q14728 455 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 GPNMBQ14956 572 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 KIAA0753Q2KHM9 967 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 DHX32Q7L7V1 743 aaKnown RBP23.93■■□□□ 1.42
SDC1-205ENST00000447124 RETREG2Q8NC44 543 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 SMARCC2Q8TAQ2 1214 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 INPP4AQ96PE3 977 aaPredicted RBP23.93■■□□□ 1.42
SDC1-205ENST00000447124 GTF2IRD1Q9UHL9 959 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 NOD1Q9Y239 953 aa23.93■■□□□ 1.42
SDC1-205ENST00000447124 ZNF200P98182 395 aaPredicted RBP23.92■■□□□ 1.42
SDC1-205ENST00000447124 BFSP2Q13515 415 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 MICU3Q86XE3 530 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 CCDC136Q96JN2 1154 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 C16orf70Q9BSU1 422 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 MLXIPQ9HAP2 919 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 TELO2Q9Y4R8 837 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 SCN5AQ14524 2016 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 TRIP12Q14669 1992 aaPredicted RBP23.92■■□□□ 1.42
SDC1-205ENST00000447124 TET1Q8NFU7 2136 aa23.92■■□□□ 1.42
SDC1-205ENST00000447124 RABGGTBP53611 331 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 APOA5Q6Q788 366 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 C7orf31Q8N865 590 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 KCNB2Q92953 911 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 CUL5Q93034 780 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 MTIF3Q9H2K0 278 aaKnown RBP23.91■■□□□ 1.42
SDC1-205ENST00000447124 PSTPIP2Q9H939 334 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 YBX2Q9Y2T7 364 aaKnown RBP23.91■■□□□ 1.42
SDC1-205ENST00000447124 SLC4A7Q9Y6M7 1214 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 CDH23Q9H251 3354 aa23.91■■□□□ 1.42
SDC1-205ENST00000447124 STAM2O75886 525 aa23.9■■□□□ 1.42
SDC1-205ENST00000447124 PFKMP08237 780 aa23.9■■□□□ 1.42
SDC1-205ENST00000447124 RFC2P35250 354 aa23.9■■□□□ 1.42
SDC1-205ENST00000447124 FUT2Q10981 343 aa23.9■■□□□ 1.42
SDC1-205ENST00000447124 ZBBXA8MT70 800 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 MYOGP15173 224 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 TRIM71Q2Q1W2 868 aaKnown RBP23.89■■□□□ 1.41
SDC1-205ENST00000447124 GNPTABQ3T906 1256 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 PCNX4Q63HM2 1172 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 SYNE3Q6ZMZ3 975 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 CYFIP1Q7L576 1253 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 WNT8BQ93098 351 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 KATNAL1Q9BW62 490 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 NKX2-4Q9H2Z4 354 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 FAM217BQ9NTX9 383 aaPredicted RBP23.89■■□□□ 1.41
SDC1-205ENST00000447124 MSRAQ9UJ68 235 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 CHD9Q3L8U1 2897 aa23.89■■□□□ 1.41
SDC1-205ENST00000447124 CPA1P15085 419 aa23.88■■□□□ 1.41
SDC1-205ENST00000447124 FOSL2P15408 326 aa23.88■■□□□ 1.41
SDC1-205ENST00000447124 RAB30Q15771 203 aa23.88■■□□□ 1.41
SDC1-205ENST00000447124 UBE2SQ16763 222 aa23.88■■□□□ 1.41
SDC1-205ENST00000447124 MAFAQ8NHW3 353 aaPredicted RBP23.88■■□□□ 1.41
SDC1-205ENST00000447124 CAGE1Q8TC20 777 aa23.88■■□□□ 1.41
SDC1-205ENST00000447124 FIBPO43427 364 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 RBL2Q08999 1139 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 NEDD9Q14511 834 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 TYW1BQ6NUM6 668 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 XRRA1Q6P2D8 792 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 TRAF7Q6Q0C0 670 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 AFAP1L1Q8TED9 768 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 GPR20Q99678 358 aa23.87■■□□□ 1.41
SDC1-205ENST00000447124 FTOQ9C0B1 505 aaKnown RBP eCLIP23.87■■□□□ 1.41
SDC1-205ENST00000447124 CNTNAP5Q8WYK1 1306 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 ZBTB43O43298 467 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 ATP9AO75110 1047 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 LGALS2P05162 132 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 CKBP12277 381 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 SELPP16109 830 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 PTK7Q13308 1070 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 KRT32Q14532 448 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 METTL7BQ6UX53 244 aa23.86■■□□□ 1.41
SDC1-205ENST00000447124 V9GY48 417 aaPredicted RBP23.86■■□□□ 1.41
SDC1-205ENST00000447124 H3BRB1 525 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 DLL1O00548 723 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 NBNO60934 754 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 ATP2A2P16615 1042 aaKnown RBP23.85■■□□□ 1.41
SDC1-205ENST00000447124 ITGB5P18084 799 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 CDC27P30260 824 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 HSPA4P34932 840 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 RTN1Q16799 776 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 TCTN1Q2MV58 587 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms