RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 GRXCR1A8MXD5 290 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 RNF223E7ERA6 249 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 TULP1O00294 542 aaPredicted RBP9.06□□□□□ -0.96
VPS50-204ENST00000438395 B4GALT4O60513 344 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 KDM4AO75164 1064 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 S1PR4O95977 384 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 GOLGA8HP0CJ92 632 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 TXNP10599 105 aaKnown RBP9.06□□□□□ -0.96
VPS50-204ENST00000438395 ACTN1P12814 892 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 IGFBP4P22692 258 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 PTGS1P23219 599 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 CDC37Q16543 378 aaPredicted RBP9.06□□□□□ -0.96
VPS50-204ENST00000438395 ASPRV1Q53RT3 343 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 PPP2R2DQ66LE6 453 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 CWC27Q6UX04 472 aaKnown RBP9.06□□□□□ -0.96
VPS50-204ENST00000438395 DGKHQ86XP1 1220 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 MCF2L2Q86YR7 1114 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 CCDC155Q8N6L0 562 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 CLEC4DQ8WXI8 215 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 PPM1EQ8WY54 764 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 ZKSCAN3Q9BRR0 538 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 KRT23Q9C075 422 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 PRDM12Q9H4Q4 367 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 CNNM2Q9H8M5 875 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 ABCB11O95342 1321 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 MCM3APO60318 1980 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 PARP1P09874 1014 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 SNHG28P0DPA3 235 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 CYP2C9P11712 490 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 ATP2A2P16615 1042 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 PURAQ00577 322 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 FUT2Q10981 343 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 TRDNQ13061 729 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 BFSP2Q13515 415 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 RASIP1Q5U651 963 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 C16orf59Q7L2K0 433 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 SCUBE3Q8IX30 993 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 SMC5Q8IY18 1101 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 NSUN6Q8TEA1 469 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 ZSCAN10Q96SZ4 725 aaPredicted RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 FTOQ9C0B1 505 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS50-204ENST00000438395 NKX2-4Q9H2Z4 354 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 TRMT13Q9NUP7 481 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 MRPL11Q9Y3B7 192 aaKnown RBP9.05□□□□□ -0.96
VPS50-204ENST00000438395 GRIN2DO15399 1336 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 UMODL1Q5DID0 1318 aa9.05□□□□□ -0.96
VPS50-204ENST00000438395 RBM47A0AV96 593 aaKnown RBP9.04□□□□□ -0.96
VPS50-204ENST00000438395 B4E1Z4 1266 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 GH1P01241 217 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 EDNRBP24530 442 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 RFC2P35250 354 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 GGCXP38435 758 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 NUCB1Q02818 461 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 TRAF1Q13077 416 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 NBPF20Q3BBV1 942 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 IFIT1BQ5T764 474 aaKnown RBP9.04□□□□□ -0.96
VPS50-204ENST00000438395 ARHGEF16Q5VV41 709 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 NFRKBQ6P4R8 1299 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 SEPT14Q6ZU15 432 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 DEFB128Q7Z7B8 93 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 FBXO11Q86XK2 927 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 PLEKHM2Q8IWE5 1019 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 MICALL1Q8N3F8 863 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 RGS22Q8NE09 1264 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 EMID1Q96A84 441 aaPredicted RBP9.04□□□□□ -0.96
VPS50-204ENST00000438395 SCLYQ96I15 445 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 RMDN3Q96TC7 470 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 DSCC1Q9BVC3 393 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 UBA5Q9GZZ9 404 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 MAF1Q9H063 256 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 WNT8AQ9H1J5 351 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 CXXC1Q9P0U4 656 aaPredicted RBP9.04□□□□□ -0.96
VPS50-204ENST00000438395 THEGQ9P2T0 379 aa9.04□□□□□ -0.96
VPS50-204ENST00000438395 ERICH2A1L162 156 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 A6NJR5 290 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 KIF28PB7ZC32 967 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 NR1I2O75469 434 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 KCNJ6P48051 423 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 PTPN11Q06124 597 aaPredicted RBP9.03□□□□□ -0.96
VPS50-204ENST00000438395 SKIV2LQ15477 1246 aaKnown RBP9.03□□□□□ -0.96
VPS50-204ENST00000438395 STXBP2Q15833 593 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 TMEM67Q5HYA8 995 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 TMEM63BQ5T3F8 832 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 CHST3Q7LGC8 479 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 RALYLQ86SE5 291 aaKnown RBP9.03□□□□□ -0.96
VPS50-204ENST00000438395 ADGRF4Q8IZF3 695 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 ENAHQ8N8S7 591 aaPredicted RBP9.03□□□□□ -0.96
VPS50-204ENST00000438395 SYTL5Q8TDW5 730 aaPredicted RBP9.03□□□□□ -0.96
VPS50-204ENST00000438395 RUFY2Q8WXA3 655 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 IWS1Q96ST2 819 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 CPVLQ9H3G5 476 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 VAT1LQ9HCJ6 419 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 PCDHA11Q9Y5I1 949 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 PRUNE2Q8WUY3 3088 aa9.03□□□□□ -0.96
VPS50-204ENST00000438395 LRRC37A2A6NM11 1700 aa9.02□□□□□ -0.96
VPS50-204ENST00000438395 NCOR1O75376 2440 aa9.02□□□□□ -0.97
VPS50-204ENST00000438395 GFRA3O60609 400 aa9.02□□□□□ -0.97
VPS50-204ENST00000438395 CFBP00751 764 aa9.02□□□□□ -0.97
VPS50-204ENST00000438395 EIF2AK2P19525 551 aaKnown RBP9.02□□□□□ -0.97
VPS50-204ENST00000438395 CASTP20810 708 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms