RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-208	ENST00000437607	RTN1	Q16799	776 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	NBPF20	Q3BBV1	942 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	CPLX2	Q6PUV4	134 aa	Known RBP	14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	RAB11FIP4	Q86YS3	637 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	PNMA1	Q8ND90	353 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	CTCFL	Q8NI51	663 aa	Predicted RBP	14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	MTG1	Q9BT17	334 aa	Predicted RBP	14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	MYL10	Q9BUA6	226 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	SENP2	Q9HC62	589 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	BRPF3	Q9ULD4	1205 aa		14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	14.01	□□□□□ -0.17
PTPRF-208	ENST00000437607	NLRC5	Q86WI3	1866 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	ZBBX	A8MT70	800 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	ARIH2	O95376	493 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	ATP2A2	P16615	1042 aa	Known RBP	14	□□□□□ -0.17
PTPRF-208	ENST00000437607	CPT1A	P50416	773 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	RPS6	P62753	249 aa	Known RBP	14	□□□□□ -0.17
PTPRF-208	ENST00000437607	CCT2	P78371	535 aa	Known RBP	14	□□□□□ -0.17
PTPRF-208	ENST00000437607	PPP2R2D	Q66LE6	453 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	RNF207	Q6ZRF8	634 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	DEFB128	Q7Z7B8	93 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	NECAB1	Q8N987	351 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	SPRYD3	Q8NCJ5	442 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	ANKS1A	Q92625	1134 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	INTS4	Q96HW7	963 aa	Known RBP	14	□□□□□ -0.17
PTPRF-208	ENST00000437607	CPVL	Q9H3G5	476 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	FOXD4L1	Q9NU39	408 aa		14	□□□□□ -0.17
PTPRF-208	ENST00000437607	CCDC196	A0A1B0GTZ2	297 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607		A6NJR5	290 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	CDKL5	O76039	1030 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	PFKM	P08237	780 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	SUPT20HL2	P0C7V6	817 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	RXRA	P19793	462 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	KIF5B	P33176	963 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	MRPS5	P82675	430 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	SCRN1	Q12765	414 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	DNER	Q8NFT8	737 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	ADAMTS19	Q8TE59	1207 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	NCOA5	Q9HCD5	579 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	RBM28	Q9NW13	759 aa	Known RBP	13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	ATG2A	Q2TAZ0	1938 aa		13.99	□□□□□ -0.17
PTPRF-208	ENST00000437607	EPOP	A6NHQ4	379 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	RBAK-RBAKDN	I3L0D1	243 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	RFXAP	O00287	272 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	NKRF	O15226	690 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	2e-6	■■□□□ 12.9
PTPRF-208	ENST00000437607	ARHGEF15	O94989	841 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	CA3	P07451	260 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	IQCF3	P0C7M6	154 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	GOLGA8H	P0CJ92	632 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	PDE4D	Q08499	809 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	ST3GAL1	Q11201	340 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	PPP2R5B	Q15173	497 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	FAM47C	Q5HY64	1035 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	NFRKB	Q6P4R8	1299 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	SCFD2	Q8WU76	684 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	TBC1D5	Q92609	795 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	CTAGE1	Q96RT6	745 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	SMC3	Q9UQE7	1217 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	KIF3A	Q9Y496	699 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	KAT6A	Q92794	2004 aa		13.98	□□□□□ -0.17
PTPRF-208	ENST00000437607	PITPNM1	O00562	1244 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	TXN	P10599	105 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	HMGN5	P82970	282 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	TFF2	Q03403	129 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	CCDC62	Q6P9F0	684 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	UHRF1	Q96T88	793 aa	Predicted RBP	13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	LLPH	Q9BRT6	129 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	UBA5	Q9GZZ9	404 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	CERS4	Q9HA82	394 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	RAPGEFL1	Q9UHV5	662 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	MTCH2	Q9Y6C9	303 aa		13.97	□□□□□ -0.17
PTPRF-208	ENST00000437607	BMP1	P13497	986 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	POU3F3	P20264	500 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	COL9A1	P20849	921 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	RFC2	P35250	354 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	GNAQ	P50148	359 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	PTPN11	Q06124	597 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	TROAP	Q12815	778 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	GRM4	Q14833	912 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	GPNMB	Q14956	572 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	USH1G	Q495M9	461 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	ASPRV1	Q53RT3	343 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	SPRED2	Q7Z698	418 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	MICALL1	Q8N3F8	863 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	RGS22	Q8NE09	1264 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	NECAB3	Q96P71	396 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	MAP3K14	Q99558	947 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	COL20A1	Q9P218	1284 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	PNMA2	Q9UL42	364 aa		13.96	□□□□□ -0.17
PTPRF-208	ENST00000437607	KPNA6	O60684	536 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	MMP3	P08254	477 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	PARP1	P09874	1014 aa	Known RBP	13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	ACTN1	P12814	892 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	ARHGAP1	Q07960	439 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	LY6K	Q17RY6	165 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	BRDT	Q58F21	947 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	GPATCH4	Q5T3I0	446 aa	Known RBP	13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	KRT40	Q6A162	431 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	TMTC3	Q6ZXV5	915 aa		13.95	□□□□□ -0.18
PTPRF-208	ENST00000437607	TRIM22	Q8IYM9	498 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms