RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 CCDC65Q8IXS2 484 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 GIMAP8Q8ND71 665 aaPredicted RBP10.57□□□□□ -0.72
HMGB4-201ENST00000425537 ETNPPLQ8TBG4 499 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 STAMQ92783 540 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 PLIN2Q99541 437 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 MMTAG2Q9BU76 263 aaKnown RBP10.57□□□□□ -0.72
HMGB4-201ENST00000425537 MAGEC2Q9UBF1 373 aaPredicted RBP10.57□□□□□ -0.72
HMGB4-201ENST00000425537 TCEAL9Q9UHQ7 104 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 DNM3Q9UQ16 869 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 ZHX2Q9Y6X8 837 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 EDIL3O43854 480 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 TPM1P09493 284 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 BCRP11274 1271 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 ALAS1P13196 640 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 ZNF18P17022 549 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 HSPA6P17066 643 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 PTGS1P23219 599 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 SFPQP23246 707 aaKnown RBP eCLIP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 RPA1P27694 616 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 COG2Q14746 738 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 CEP55Q53EZ4 464 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 SH3D19Q5HYK7 790 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 FOXR2Q6PJQ5 311 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 ADSSL1Q8N142 457 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 CCDC112Q8NEF3 446 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 NEK9Q8TD19 979 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 NELFBQ8WX92 580 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 PNMA5Q96PV4 448 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 RIT2Q99578 217 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 MTRQ99707 1265 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 POLR3CQ9BUI4 534 aaPredicted RBP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 GBA2Q9HCG7 927 aaPredicted RBP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 TUFT1Q9NNX1 390 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 EMILIN3Q9NT22 766 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 FBXO28Q9NVF7 368 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.56□□□□□ -0.72
HMGB4-201ENST00000425537 CTNND2Q9UQB3 1225 aa10.56□□□□□ -0.72
HMGB4-201ENST00000425537 TMEM88BA6NKF7 163 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 VWA5AO00534 786 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 ATP2A1O14983 1001 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 MSH4O15457 936 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 CCP110O43303 1012 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 KLRC4O43908 158 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 GAS7O60861 476 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 KRT18P05783 430 aaKnown RBP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 EEF1GP26641 437 aaKnown RBP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 MCM6Q14566 821 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 LRCH2Q5VUJ6 765 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 CDKAL1Q5VV42 579 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 NCAPH2Q6IBW4 605 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 TMC6Q7Z403 805 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 CCDC84Q86UT8 332 aaPredicted RBP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 CPXCR1Q8N123 301 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 SLC5A5Q92911 643 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 ZKSCAN4Q969J2 545 aaPredicted RBP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 CLMNQ96JQ2 1002 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 AGBL1Q96MI9 1066 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 TSG101Q99816 390 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 MXRA8Q9BRK3 442 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 TEKT3Q9BXF9 490 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 THAP9Q9H5L6 903 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 RRAGDQ9NQL2 400 aaPredicted RBP10.55□□□□□ -0.72
HMGB4-201ENST00000425537 BLOC1S4Q9NUP1 217 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 ZNF536O15090 1300 aa10.55□□□□□ -0.72
HMGB4-201ENST00000425537 PAPPA2Q9BXP8 1791 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 PHIPQ8WWQ0 1821 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 IGLV3-22A0A075B6J6 115 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 FAM86B1E9PN63 330 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 MEIS1O00470 390 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 USP2O75604 605 aaPredicted RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 MYCNP04198 464 aaPredicted RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 FAM86B2P0C5J1 330 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 PLA2G4BP0C869 781 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 CCNE1P24864 410 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 CASP1P29466 404 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 PRCPP42785 496 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 HMGCS2P54868 508 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 HUNKP57058 714 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 PPP2R5CQ13362 524 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 TRIM14Q14142 442 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 PCNX4Q63HM2 1172 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 SPECC1LQ69YQ0 1117 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 CYP4F22Q6NT55 531 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 RNF207Q6ZRF8 634 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 FILIP1Q7Z7B0 1213 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 VSTM4Q8IW00 320 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 LRRC8AQ8IWT6 810 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 TRMT44Q8IYL2 757 aaKnown RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 ANKRD13AQ8IZ07 590 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 GUF1Q8N442 669 aaKnown RBP10.54□□□□□ -0.72
HMGB4-201ENST00000425537 MB21D1Q8N884 522 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 DDX12PQ92771 950 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 P2RX5Q93086 422 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 LENG9Q96B70 501 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 TRIM47Q96LD4 638 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 TRERF1Q96PN7 1200 aa10.54□□□□□ -0.72
HMGB4-201ENST00000425537 ZNF577Q9BSK1 485 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms