RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 HOXD8P13378 290 aaPredicted RBP21.93■■□□□ 1.1
SF3A1-202ENST00000411423 ICAM3P32942 547 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 METAP2P50579 478 aaKnown RBP eCLIP21.93■■□□□ 1.12e-6■■■□□ 18.6
SF3A1-202ENST00000411423 RCAN1P53805 252 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 CCL23P55773 120 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 CHMP4BP1P59074 171 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 LAMC2Q13753 1193 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 TOB2Q14106 344 aaPredicted RBP21.93■■□□□ 1.1
SF3A1-202ENST00000411423 FAM47CQ5HY64 1035 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 PCNX4Q63HM2 1172 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 NFRKBQ6P4R8 1299 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 CUL5Q93034 780 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 DOCK5Q9H7D0 1870 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 ZSWIM6Q9HCJ5 1215 aa21.93■■□□□ 1.1
SF3A1-202ENST00000411423 SPATA31C2B4DYI2 1134 aa21.92■■□□□ 1.1
SF3A1-202ENST00000411423 EPB41L2O43491 1005 aaKnown RBP21.92■■□□□ 1.1
SF3A1-202ENST00000411423 FGD1P98174 961 aa21.92■■□□□ 1.1
SF3A1-202ENST00000411423 TMEM240Q5SV17 173 aa21.92■■□□□ 1.1
SF3A1-202ENST00000411423 SCLYQ96I15 445 aa21.92■■□□□ 1.1
SF3A1-202ENST00000411423 PGBD1Q96JS3 809 aa21.92■■□□□ 1.1
SF3A1-202ENST00000411423 HAS3O00219 553 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 PPFIA3O75145 1194 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 TGFB3P10600 412 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 HIC1Q14526 733 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 DGKDQ16760 1214 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 GDF6Q6KF10 455 aaPredicted RBP21.91■■□□□ 1.1
SF3A1-202ENST00000411423 KCNV1Q6PIU1 500 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 RUFY3Q7L099 469 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 RNPC3Q96LT9 517 aaKnown RBP21.91■■□□□ 1.1
SF3A1-202ENST00000411423 SPATA33Q96N06 139 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 LARP6Q9BRS8 491 aaKnown RBP21.91■■□□□ 1.1
SF3A1-202ENST00000411423 PCDHA6Q9UN73 950 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 PCDHA8Q9Y5H6 950 aa21.91■■□□□ 1.1
SF3A1-202ENST00000411423 F2P00734 622 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 ITGB5P18084 799 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 PSMA5P28066 241 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 PSEN2P49810 448 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 NAPAP54920 295 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 EVCP57679 992 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 PPIGQ13427 754 aaKnown RBP eCLIP21.9■■□□□ 1.17e-8■□□□□ 9.3
SF3A1-202ENST00000411423 NTRK3Q16288 839 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 PKN1Q16512 942 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 FAM109BQ6ICB4 259 aaPredicted RBP21.9■■□□□ 1.1
SF3A1-202ENST00000411423 GPR153Q6NV75 609 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 TMEM199Q8N511 208 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 UPF3BQ9BZI7 483 aaKnown RBP21.9■■□□□ 1.1
SF3A1-202ENST00000411423 TMEM260Q9NX78 707 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 BARHL2Q9NY43 387 aa21.9■■□□□ 1.1
SF3A1-202ENST00000411423 FIBPO43427 364 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 ATP9AO75110 1047 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 STAM2O75886 525 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 PDIA3P30101 505 aaKnown RBP21.89■■□□□ 1.09
SF3A1-202ENST00000411423 PTPN11Q06124 597 aaPredicted RBP21.89■■□□□ 1.09
SF3A1-202ENST00000411423 RASIP1Q5U651 963 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 ZNF365Q70YC5 407 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 CYFIP1Q7L576 1253 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 SESTD1Q86VW0 696 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 DEFB123Q8N688 67 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 DHX38Q92620 1227 aaKnown RBP21.89■■□□□ 1.09
SF3A1-202ENST00000411423 PHKBQ93100 1093 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 C16orf70Q9BSU1 422 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 ALG1Q9BT22 464 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 NCOA5Q9HCD5 579 aaKnown RBP21.89■■□□□ 1.09
SF3A1-202ENST00000411423 IL23AQ9NPF7 189 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 RIC8AQ9NPQ8 531 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 HDAC6Q9UBN7 1215 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 UBIAD1Q9Y5Z9 338 aa21.89■■□□□ 1.09
SF3A1-202ENST00000411423 CLK2P49760 499 aaKnown RBP21.88■■□□□ 1.09
SF3A1-202ENST00000411423 MFSD10Q14728 455 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 PFKFB3Q16875 520 aaPredicted RBP21.88■■□□□ 1.09
SF3A1-202ENST00000411423 GNPTABQ3T906 1256 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 PPP1R18Q6NYC8 613 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 MLXIPQ9HAP2 919 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 SCN5AQ14524 2016 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 COL6A3P12111 3177 aa21.88■■□□□ 1.09
SF3A1-202ENST00000411423 SMCO2A6NFE2 343 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 SUPT20HL2P0C7V6 817 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 CCT2P78371 535 aaKnown RBP21.87■■□□□ 1.09
SF3A1-202ENST00000411423 ZNF200P98182 395 aaPredicted RBP21.87■■□□□ 1.09
SF3A1-202ENST00000411423 KIAA0753Q2KHM9 967 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 XRRA1Q6P2D8 792 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 WNT8BQ93098 351 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 GPR20Q99678 358 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 TM6SF1Q9BZW5 370 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 MTMR10Q9NXD2 777 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 CXXC1Q9P0U4 656 aaPredicted RBP21.87■■□□□ 1.09
SF3A1-202ENST00000411423 GTF2IRD1Q9UHL9 959 aa21.87■■□□□ 1.09
SF3A1-202ENST00000411423 PPFIA4O75335 1185 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 SCG2P13521 617 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 KCNA2P16389 499 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 ADCY7P51828 1080 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 PTGISQ16647 500 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 METTL7BQ6UX53 244 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 CYP2W1Q8TAV3 490 aa21.86■■□□□ 1.09
SF3A1-202ENST00000411423 SPDYE3A6NKU9 549 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 GRXCR1A8MXD5 290 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 PRPF3O43395 683 aaKnown RBP21.85■■□□□ 1.09
SF3A1-202ENST00000411423 LGALS2P05162 132 aa21.85■■□□□ 1.09
SF3A1-202ENST00000411423 SMAD3P84022 425 aaKnown RBP21.85■■□□□ 1.09
SF3A1-202ENST00000411423 NEDD9Q14511 834 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms