RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CHUKO15111 745 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 LDHCP07864 332 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 CDK8P49336 464 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 C12orf60Q5U649 245 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ZNF473Q8WTR7 871 aaKnown RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 LBHD1Q9BQE6 289 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-202ENST00000409251 ZHX3Q9H4I2 956 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 KCNG1Q9UIX4 513 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 DAGLAQ9Y4D2 1042 aa14.3□□□□□ -0.12
PTPRN-202ENST00000409251 MYH2Q9UKX2 1941 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 MYH13Q9UKX3 1938 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 PPP1R3GB7ZBB8 358 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 RPS6KA5O75582 802 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 PMS1P54277 932 aaKnown RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 MYO1EQ12965 1108 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 IKQ13123 557 aaPredicted RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 SNCBQ16143 134 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 ALS2CR12Q96Q35 445 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 GOLGA8KD6RF30 607 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 IFNAR2P48551 515 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 AMPD2Q01433 879 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 EHHADHQ08426 723 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 TUBB2AQ13885 445 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 FAM133BQ5BKY9 247 aaKnown RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 TUBB2BQ9BVA1 445 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 RTFDC1Q9BY42 306 aaPredicted RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 SLC40A1Q9NP59 571 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 ARPP21Q9UBL0 812 aaPredicted RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 STK38LQ9Y2H1 464 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 SRPRBQ9Y5M8 271 aaKnown RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 UBA7P41226 1012 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 MAGEA1P43355 309 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 ZYXQ15942 572 aaKnown RBP14.29□□□□□ -0.12
PTPRN-202ENST00000409251 TTC38Q5R3I4 469 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 TMTC2Q8N394 836 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 CEP95Q96GE4 821 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 LAMA4Q16363 1823 aa14.29□□□□□ -0.12
PTPRN-202ENST00000409251 ATRNO75882 1429 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 PHF20L1A8MW92 1017 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 GDF11O95390 407 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 ASIC1P78348 528 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 EHBP1Q8NDI1 1231 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 DDX60Q8IY21 1712 aaKnown RBP14.28□□□□□ -0.12
PTPRN-202ENST00000409251 SPAG1Q07617 926 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 LLGL1Q15334 1064 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 NBPF9Q3BBW0 867 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 NLRP14Q86W24 1093 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 TMEM47Q9BQJ4 181 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 TUBGCP2Q9BSJ2 902 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 FAM167BQ9BTA0 163 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 STIM2Q9P246 746 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 ANKRD36CQ5JPF3 1778 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 SEMA3EO15041 775 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 KRT2P35908 639 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 GSTO1P78417 241 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 CRY2Q49AN0 593 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 TBC1D1Q86TI0 1168 aaPredicted RBP14.28□□□□□ -0.12
PTPRN-202ENST00000409251 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.28□□□□□ -0.12
PTPRN-202ENST00000409251 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.28□□□□□ -0.12
PTPRN-202ENST00000409251 FLT1P17948 1338 aa14.28□□□□□ -0.12
PTPRN-202ENST00000409251 PSMA7O14818 248 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 RPN1P04843 607 aaKnown RBP14.27□□□□□ -0.12
PTPRN-202ENST00000409251 MB21D1Q8N884 522 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 TRIML1Q8N9V2 468 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 CCDC51Q96ER9 411 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 DPH5Q9H2P9 285 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 TDRD3Q9H7E2 651 aaKnown RBP14.27□□□□□ -0.12
PTPRN-202ENST00000409251 ZNF277Q9NRM2 450 aaPredicted RBP14.27□□□□□ -0.12
PTPRN-202ENST00000409251 CD2APQ9Y5K6 639 aa14.27□□□□□ -0.12
PTPRN-202ENST00000409251 TUBB4BP68371 445 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 PKN1Q16512 942 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 TRIM68Q6AZZ1 485 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 RCSD1Q6JBY9 416 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 KCTD1Q719H9 257 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 AP1M1Q9BXS5 423 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 PLAAQ9Y263 795 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 ATP6V0A2Q9Y487 856 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 USP17L5A8MUK1 530 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 PPIP5K2O43314 1243 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 AKR1B1P15121 316 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 CTNNA1P35221 906 aaKnown RBP14.27□□□□□ -0.13
PTPRN-202ENST00000409251 EIF4A3P38919 411 aaKnown RBP14.27□□□□□ -0.13
PTPRN-202ENST00000409251 SARNPP82979 210 aaKnown RBP14.27□□□□□ -0.13
PTPRN-202ENST00000409251 MKRN4PQ13434 485 aaPredicted RBP14.27□□□□□ -0.13
PTPRN-202ENST00000409251 DYMQ7RTS9 669 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 CCDC84Q86UT8 332 aaPredicted RBP14.27□□□□□ -0.13
PTPRN-202ENST00000409251 SPICE1Q8N0Z3 855 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 VIPAS39Q9H9C1 493 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 L3MBTL1Q9Y468 752 aa14.27□□□□□ -0.13
PTPRN-202ENST00000409251 A0A1B0GUA9 196 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 TCP10L2B9ZVM9 353 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 KLRF2D3W0D1 207 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 GLI1P08151 1106 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 EPHB4P54760 987 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 GFPT1Q06210 699 aaPredicted RBP14.26□□□□□ -0.13
PTPRN-202ENST00000409251 ADCY1Q08828 1119 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 CCDC155Q8N6L0 562 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 MDM1Q8TC05 714 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 MGARPQ8TDB4 240 aa14.26□□□□□ -0.13
PTPRN-202ENST00000409251 GJA10Q969M2 543 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms