RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 GJC1P36383 396 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 SARSP49591 514 aaKnown RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 PAK2Q13177 524 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 MYOCDQ8IZQ8 938 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 hCG_2014768A0A024R1R8 64 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 GSTTP1A0A1W2PQM5 241 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 SH3RF3Q8TEJ3 882 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 FAM84BQ96KN1 310 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ARPP21Q9UBL0 812 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 LIMA1Q9UHB6 759 aaKnown RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 TACC3Q9Y6A5 838 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 MED1Q15648 1581 aaPredicted RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 SNAP25P60880 206 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 GUCY1A3Q02108 690 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 SPATA4Q8NEY3 305 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 U2AF1L4Q8WU68 220 aaKnown RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 LARP4BQ92615 738 aaKnown RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 FAM184BQ9ULE4 1060 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 PCDHA12Q9UN75 941 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 BCS1LQ9Y276 419 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 CACNA1FO60840 1977 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 CETN3O15182 167 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 FAM26FQ5R3K3 315 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 FAM196AQ6ZSG2 479 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 C3orf67Q6ZVT6 689 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 PEX26Q7Z412 305 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 GPBP1Q86WP2 473 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ADSSL1Q8N142 457 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 MGARPQ8TDB4 240 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 MRRFQ96E11 262 aaKnown RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 FAM167BQ9BTA0 163 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ZNF804BA4D1E1 1349 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 TCRBV5S4A2TA0A5A2 114 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 CLIC2O15247 247 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 VIMP08670 466 aaKnown RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 SLC1A4P43007 532 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ADCY7P51828 1080 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 PABPC4Q13310 644 aaKnown RBP eCLIP13.09□□□□□ -0.314e-8■■□□□ 13.7
HMGB1-206ENST00000405805 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ADAM9Q13443 819 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 CCDC65Q8IXS2 484 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ABTB1Q969K4 478 aaPredicted RBP13.09□□□□□ -0.31
HMGB1-206ENST00000405805 CAPN6Q9Y6Q1 641 aa13.09□□□□□ -0.31
HMGB1-206ENST00000405805 ZSCAN5CA6NGD5 496 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-206ENST00000405805 SLIT3O75094 1523 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 PALMO75781 387 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 TRAPPC10P48553 1259 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 SCNN1DP51172 638 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 LRRC31Q6UY01 552 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 FAM205AQ6ZU69 1335 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 KCTD1Q719H9 257 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 LMNTD2Q8IXW0 634 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 DHTKD1Q96HY7 919 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-206ENST00000405805 RPGRIP1Q96KN7 1286 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 OSBPL9Q96SU4 736 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 PANK4Q9NVE7 773 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 KDM4FA0A1W2PPD8 638 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 SFI1A8K8P3 1242 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 IRX1P78414 480 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-206ENST00000405805 APBA1Q02410 837 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 ADCY1Q08828 1119 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 MIPOL1Q8TD10 442 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 THOC1Q96FV9 657 aaKnown RBP13.08□□□□□ -0.32
HMGB1-206ENST00000405805 TMEM47Q9BQJ4 181 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 HPCAL4Q9UM19 191 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 GCOM1H8Y6P7 765 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-206ENST00000405805 KRIT1O00522 736 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 TDP2O95551 362 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 MYZAPP0CAP1 466 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 IFNAR2P48551 515 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 MFSD14BQ5SR56 506 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 CEP128Q6ZU80 1094 aa13.08□□□□□ -0.32
HMGB1-206ENST00000405805 CHD2O14647 1828 aaKnown RBP13.07□□□□□ -0.32
HMGB1-206ENST00000405805 HNRNPH1P31943 449 aaKnown RBP13.07□□□□□ -0.32
HMGB1-206ENST00000405805 CDKAL1Q5VV42 579 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 DPP8Q6V1X1 898 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-206ENST00000405805 ZNF804AQ7Z570 1209 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 OR2W6PQ8NHA6 318 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 KIF9Q9HAQ2 790 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 CD248Q9HCU0 757 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 ATP8A2Q9NTI2 1148 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 STIM2Q9P246 746 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 SWAP70Q9UH65 585 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 SEMA3EO15041 775 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 BTDP43251 543 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 SEC24CP53992 1094 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 VWA3BQ502W6 1294 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 ARMC3Q5W041 872 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 PTF1AQ7RTS3 328 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 DDX12PQ92771 950 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 THAP9Q9H5L6 903 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 CAPN11Q9UMQ6 739 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 GCNT3O95395 438 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 NTSR2O95665 410 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 MYBL1P10243 752 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 MYBL2P10244 700 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 HERVK_113P62684 666 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 GTF2IP78347 998 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 PDE1CQ14123 709 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-206ENST00000405805 ZYXQ15942 572 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms