RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ZBTB5O15062 677 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 TLL1O43897 1013 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 NBNO60934 754 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 MFSD10Q14728 455 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 SKIV2LQ15477 1246 aaKnown RBP33.06■■■□□ 2.88
HMGB1-205ENST00000399494 KIAA0753Q2KHM9 967 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 KATNAL1Q9BW62 490 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 PCDHA1Q9Y5I3 950 aa33.06■■■□□ 2.88
HMGB1-205ENST00000399494 PRRC2BQ5JSZ5 2229 aaKnown RBP33.06■■■□□ 2.88
HMGB1-205ENST00000399494 PALM3A6NDB9 673 aaPredicted RBP33.05■■■□□ 2.88
HMGB1-205ENST00000399494 F2P00734 622 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 MYCLP12524 364 aaPredicted RBP33.05■■■□□ 2.88
HMGB1-205ENST00000399494 HOXD8P13378 290 aaPredicted RBP33.05■■■□□ 2.88
HMGB1-205ENST00000399494 AAK1Q2M2I8 961 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 TCTN1Q2MV58 587 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 MYSM1Q5VVJ2 828 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 CNKSR3Q6P9H4 555 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 SPRED2Q7Z698 418 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 VSIG10LQ86VR7 867 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 SAMD3Q8N6K7 520 aa33.05■■■□□ 2.88
HMGB1-205ENST00000399494 PPFIA4O75335 1185 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 ZNF286BP0CG31 522 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 PTK7Q13308 1070 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 TRIM71Q2Q1W2 868 aaKnown RBP33.04■■■□□ 2.88
HMGB1-205ENST00000399494 TMCO2Q7Z6W1 182 aaPredicted RBP33.04■■■□□ 2.88
HMGB1-205ENST00000399494 MAP4K1Q92918 833 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 ANO2Q9NQ90 1003 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 PTPRSQ13332 1948 aa33.04■■■□□ 2.88
HMGB1-205ENST00000399494 COL9A1P20849 921 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 DEFB103AP81534 67 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 GRB10Q13322 594 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 SLC35G1Q2M3R5 365 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 KCNV1Q6PIU1 500 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 TRAF7Q6Q0C0 670 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 NECAB3Q96P71 396 aaPredicted RBP33.03■■■□□ 2.88
HMGB1-205ENST00000399494 RBM8AQ9Y5S9 174 aaKnown RBP33.03■■■□□ 2.88
HMGB1-205ENST00000399494 BDP1A6H8Y1 2624 aa33.03■■■□□ 2.88
HMGB1-205ENST00000399494 MYH7BA7E2Y1 1941 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 LCHNA4D1U4 455 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 LPXNO60711 386 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 CYP21A2P08686 494 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 HOXA13P31271 388 aaPredicted RBP33.02■■■□□ 2.88
HMGB1-205ENST00000399494 KCNQ1P51787 676 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 ZNF200P98182 395 aaPredicted RBP33.02■■■□□ 2.88
HMGB1-205ENST00000399494 SP2Q02086 613 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 PGM5Q15124 567 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 CELF3Q5SZQ8 465 aaKnown RBP33.02■■■□□ 2.88
HMGB1-205ENST00000399494 WNT8BQ93098 351 aa33.02■■■□□ 2.88
HMGB1-205ENST00000399494 ABHD14A-ACY1A0A1B0GW23 586 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 TRDNQ13061 729 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 HIC1Q14526 733 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 HSDL1Q3SXM5 330 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 ZNF618Q5T7W0 954 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 ZBED2Q9BTP6 218 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 LSG1Q9H089 658 aaKnown RBP33.01■■■□□ 2.87
HMGB1-205ENST00000399494 RIOX1Q9H6W3 641 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 COG5Q9UP83 839 aa33.01■■■□□ 2.87
HMGB1-205ENST00000399494 TCF20Q9UGU0 1960 aaKnown RBP33.01■■■□□ 2.87
HMGB1-205ENST00000399494 TGFB3P10600 412 aa33■■■□□ 2.87
HMGB1-205ENST00000399494 IL31RAQ8NI17 732 aa33■■■□□ 2.87
HMGB1-205ENST00000399494 SPATA33Q96N06 139 aa33■■■□□ 2.87
HMGB1-205ENST00000399494 NCOR1O75376 2440 aa32.99■■■□□ 2.87
HMGB1-205ENST00000399494 RBAK-RBAKDNI3L0D1 243 aa32.99■■■□□ 2.87
HMGB1-205ENST00000399494 SORBS3O60504 671 aa32.99■■■□□ 2.87
HMGB1-205ENST00000399494 GGPS1O95749 300 aa32.99■■■□□ 2.87
HMGB1-205ENST00000399494 PIGSQ96S52 555 aa32.99■■■□□ 2.87
HMGB1-205ENST00000399494 GJB5O95377 273 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 IKBKEQ14164 716 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 MBTPS1Q14703 1052 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 GRM4Q14833 912 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 ZFP91Q96JP5 570 aaPredicted RBP32.98■■■□□ 2.87
HMGB1-205ENST00000399494 RAD9AQ99638 391 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 C16orf70Q9BSU1 422 aa32.98■■■□□ 2.87
HMGB1-205ENST00000399494 GCOM1H8Y6P7 765 aaPredicted RBP32.97■■■□□ 2.87
HMGB1-205ENST00000399494 POLR2MP0CAP2 368 aa32.97■■■□□ 2.87
HMGB1-205ENST00000399494 RALYLQ86SE5 291 aaKnown RBP32.97■■■□□ 2.87
HMGB1-205ENST00000399494 HOMER1Q86YM7 354 aa32.97■■■□□ 2.87
HMGB1-205ENST00000399494 GPKOWQ92917 476 aaPredicted RBP eCLIP32.97■■■□□ 2.87
HMGB1-205ENST00000399494 EFCAB14O75071 495 aa32.96■■■□□ 2.87
HMGB1-205ENST00000399494 UBA1P22314 1058 aaKnown RBP32.96■■■□□ 2.87
HMGB1-205ENST00000399494 TRAF1Q13077 416 aa32.96■■■□□ 2.87
HMGB1-205ENST00000399494 SENP2Q9HC62 589 aa32.96■■■□□ 2.87
HMGB1-205ENST00000399494 IFIT3O14879 490 aaKnown RBP32.95■■■□□ 2.87
HMGB1-205ENST00000399494 CYTH3O43739 400 aa32.95■■■□□ 2.87
HMGB1-205ENST00000399494 CCND2P30279 289 aa32.95■■■□□ 2.87
HMGB1-205ENST00000399494 HLA-CQ95604 372 aa32.95■■■□□ 2.87
HMGB1-205ENST00000399494 BCAS3Q9H6U6 928 aa32.95■■■□□ 2.87
HMGB1-205ENST00000399494 LMCD1Q9NZU5 365 aa32.95■■■□□ 2.87
HMGB1-205ENST00000399494 PNMA6FA0A0J9YX94 578 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 E7EWF7 191 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 SERINC5Q86VE9 423 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 FCHSD1Q86WN1 690 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 NCOA7Q8NI08 942 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 MLXIPQ9HAP2 919 aa32.94■■■□□ 2.86
HMGB1-205ENST00000399494 LGR5O75473 907 aa32.93■■■□□ 2.86
HMGB1-205ENST00000399494 ERVK-21P61565 698 aa32.93■■■□□ 2.86
HMGB1-205ENST00000399494 TROAPQ12815 778 aa32.93■■■□□ 2.86
HMGB1-205ENST00000399494 LINC01553A4QN01 128 aa32.92■■■□□ 2.86
HMGB1-205ENST00000399494 GDPD5Q8WTR4 605 aa32.92■■■□□ 2.86
HMGB1-205ENST00000399494 TGS1Q96RS0 853 aaKnown RBP32.92■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms