RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 WDR11Q9BZH6 1224 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 EXOC8Q8IYI6 725 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 FANCLQ9NW38 375 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 CYP21A2P08686 494 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 FAM186BQ8IYM0 893 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 RPF1Q9H9Y2 349 aaKnown RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 SLC12A1Q13621 1099 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 CDO1Q16878 200 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 SLC17A8Q8NDX2 589 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 LSG1Q9H089 658 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 SLC12A6Q9UHW9 1150 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 SAR1BQ9Y6B6 198 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ATP8B3O60423 1300 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 RPS6KA4O75676 772 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 PRDX5P30044 214 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 TM6SF1Q9BZW5 370 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 RBBP5Q15291 538 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 CCDC170Q8IYT3 715 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 PRPF38AQ8NAV1 312 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 TRIM58Q8NG06 486 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 CHAMP1Q96JM3 812 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ASNSP08243 561 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 MCAMP43121 646 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 CATSPER4Q7RTX7 472 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ELMOD1Q8N336 334 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 OSBP2Q969R2 916 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 GDAQ9Y2T3 454 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 PRR36Q9H6K5 1346 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 YWHAGP61981 247 aaKnown RBP eCLIP12.35□□□□□ -0.43
TTC28-201ENST00000397906 OR8K1Q8NGG5 319 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 SPATA17Q96L03 361 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 EFCC1Q9HA90 598 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 FEZ2Q9UHY8 353 aaPredicted RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 LMNB1P20700 586 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 LRRC4Q9HBW1 653 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 METTL14Q9HCE5 456 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 PLCB1Q9NQ66 1216 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ANGPTL3Q9Y5C1 460 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 HEXIM1O94992 359 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 ACTN1P12814 892 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ATF2P15336 505 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 STX2P32856 288 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 PKNOX2Q96KN3 472 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 NCAPGQ9BPX3 1015 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 USP17L5A8MUK1 530 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 ZNF18P17022 549 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 PKP1Q13835 747 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 VSIG1Q86XK7 387 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 CPVLQ9H3G5 476 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 GCNT4Q9P109 453 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 NDUFAB1O14561 156 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 SLFNL1Q499Z3 407 aa12.35□□□□□ -0.43
TTC28-201ENST00000397906 TWF2Q6IBS0 349 aaKnown RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 RNF26Q9BY78 433 aaPredicted RBP12.35□□□□□ -0.43
TTC28-201ENST00000397906 S100BP04271 92 aaPredicted RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 KRT33BQ14525 404 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 RWDD4Q6NW29 188 aaKnown RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 CALN1Q9BXU9 219 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 SPATA31A3Q5VYP0 1347 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 MTMR1Q13613 665 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 SEPT6Q14141 434 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 CLASP1Q7Z460 1538 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 KCTD6Q8NC69 237 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 SPDYE1Q8NFV5 336 aaPredicted RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 MSTO1Q9BUK6 570 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 NUF2Q9BZD4 464 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 ZSWIM5Q9P217 1185 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 A0A0G2JLW4 131 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 TTLL11Q8NHH1 800 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 OR6B2Q6IFH4 312 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 THNSL1Q8IYQ7 743 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 BBS5Q8N3I7 341 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 RMDN3Q96TC7 470 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 FIS1Q9Y3D6 152 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 PNMA6FA0A0J9YX94 578 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 RNF139Q8WU17 664 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 ATG3Q9NT62 314 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 MMP1P03956 469 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 PEX3P56589 373 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 ADCY1Q08828 1119 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 P3H4Q92791 437 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 HOXC10Q9NYD6 342 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 SYNMO15061 1565 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 RGS16O15492 202 aaPredicted RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 GAP43P17677 238 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 MAP7D3Q8IWC1 876 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 GOLGA8CPA6NN73 597 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 LAD1O00515 517 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 GOLGA8FQ08AF8 430 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 GOLGA8DPQ0D2H9 430 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 MTMR3Q13615 1198 aa12.34□□□□□ -0.43
TTC28-201ENST00000397906 ALKBH8Q96BT7 664 aaKnown RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 CCDC94Q9BW85 323 aaPredicted RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.34□□□□□ -0.43
TTC28-201ENST00000397906 MAPK4P31152 587 aa12.33□□□□□ -0.43
TTC28-201ENST00000397906 DNAAF3Q8N9W5 541 aa12.33□□□□□ -0.43
TTC28-201ENST00000397906 PPFIBP2Q8ND30 876 aa12.33□□□□□ -0.43
TTC28-201ENST00000397906 GJD4Q96KN9 370 aaPredicted RBP12.33□□□□□ -0.43
TTC28-201ENST00000397906 AFPP02771 609 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms