RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PHF20Q9BVI0 1012 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 CBX8Q9HC52 389 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 HMX1Q9NP08 348 aaPredicted RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 PXMP2Q9NR77 195 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 BIN2Q9UBW5 565 aaPredicted RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 PCDHA4Q9UN74 947 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 ZKSCAN5Q9Y2L8 839 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 COL11A1P12107 1806 aaPredicted RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 MAFGO15525 162 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 INHAP05111 366 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 NDUFA8P51970 172 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PDE4DQ08499 809 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 STX1AQ16623 288 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 AXDND1Q5T1B0 1012 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 COL13A1Q5TAT6 717 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 PCNX4Q63HM2 1172 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 ARMCX2Q7L311 632 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 LUZP1Q86V48 1076 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 VSIG10LQ86VR7 867 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 NOSTRINQ8IVI9 506 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 DNAJC25Q9H1X3 360 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PPP6R2O75170 966 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 ECM2O94769 699 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 SNAI1O95863 264 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 NR3C2P08235 984 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 TGFB3P10600 412 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 ELNP15502 786 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 CMA1P23946 247 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 CCND2P30279 289 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 HOXA13P31271 388 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 CACNB2Q08289 660 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 ACVR2BQ13705 512 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PTPAQ15257 358 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 CCL14Q16627 93 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 IQSEC1Q6DN90 963 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 USP17L6PQ6QN14 398 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 DIS3L2Q8IYB7 885 aaKnown RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 TAAR1Q96RJ0 339 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PDCD2LQ9BRP1 358 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 FOXP1Q9H334 677 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.54□□□□□ -0.56
VPS53-202ENST00000389040 FLRT1Q9NZU1 646 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 VPS54Q9P1Q0 977 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 COL20A1Q9P218 1284 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PCDHA6Q9UN73 950 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 KCNJ14Q9UNX9 436 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 PCDHA8Q9Y5H6 950 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 CASP8AP2Q9UKL3 1982 aa11.54□□□□□ -0.56
VPS53-202ENST00000389040 SEPT4O43236 478 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 AP5Z1O43299 807 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 CYBAP13498 195 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
VPS53-202ENST00000389040 ZNF165P49910 485 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 USP11P51784 963 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 FCHSD1Q86WN1 690 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 BLIDQ8IZY5 108 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 CDHR1Q96JP9 859 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 Q9Y3F1 56 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 MGAMO43451 1857 aa11.53□□□□□ -0.56
VPS53-202ENST00000389040 RBM47A0AV96 593 aaKnown RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 BTBD18B2RXH4 712 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 M0R2N6 131 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 NKRFO15226 690 aaKnown RBP eCLIP11.52□□□□□ -0.56
VPS53-202ENST00000389040 CYP3A4P08684 503 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 ZNF865P0CJ78 1059 aaPredicted RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 TAL1P17542 331 aaPredicted RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 MARCKSP29966 332 aaPredicted RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 CYP2C19P33261 490 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 SREBF1P36956 1147 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 PGM5Q15124 567 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 GNPTABQ3T906 1256 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 KRT25Q7Z3Z0 450 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 NAP1L4Q99733 375 aaKnown RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 SDF4Q9BRK5 362 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 PAK6Q9NQU5 681 aaPredicted RBP11.52□□□□□ -0.56
VPS53-202ENST00000389040 FAM184BQ9ULE4 1060 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 ASTN1O14525 1302 aa11.52□□□□□ -0.56
VPS53-202ENST00000389040 AKR1A1P14550 325 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 PFKFB1P16118 471 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 SH3TC2Q8TF17 1288 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 SCFD2Q8WU76 684 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 TMEM106CQ9BVX2 250 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.52□□□□□ -0.57
VPS53-202ENST00000389040 MYH6P13533 1939 aa11.52□□□□□ -0.57
VPS53-202ENST00000389040 ZNF500O60304 480 aaPredicted RBP11.51□□□□□ -0.57
VPS53-202ENST00000389040 ZNF202O95125 648 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 GJB1P08034 283 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 KRT2P35908 639 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 NPY5RQ15761 445 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 RILPL1Q5EBL4 403 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 C11orf57Q6ZUT1 292 aaPredicted RBP11.51□□□□□ -0.57
VPS53-202ENST00000389040 NIPA1Q7RTP0 329 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 TNS4Q8IZW8 715 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 INPP4AQ96PE3 977 aaPredicted RBP11.51□□□□□ -0.57
VPS53-202ENST00000389040 ANO3Q9BYT9 981 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 KATNBL1Q9H079 304 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 ANO10Q9NW15 660 aa11.51□□□□□ -0.57
VPS53-202ENST00000389040 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS53-202ENST00000389040 CUTAO60888 179 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms