RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ABCB5Q2M3G0 1257 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 TRIM50Q86XT4 487 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 CCDC197Q8NCU1 140 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 AS3MTQ9HBK9 375 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 MYL7Q01449 175 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 EN1Q05925 392 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-203ENST00000372407 LRRC41Q15345 812 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 PDZD4Q76G19 769 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-203ENST00000372407 LRRIQ4A6NIV6 560 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 hCG_1984214I3L0E3 225 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 HNRNPDLO14979 420 aaKnown RBP12.44□□□□□ -0.42
PTPRF-203ENST00000372407 PRKAB2O43741 272 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 IFT88Q13099 833 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 MAP7D3Q8IWC1 876 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 ZNF713Q8N859 430 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-203ENST00000372407 CFAP61Q8NHU2 1237 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 SUGCTQ9HAC7 445 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 ATP10DQ9P241 1426 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 XDHP47989 1333 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 CLCN6P51797 869 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 DYNLL1P63167 89 aaKnown RBP12.44□□□□□ -0.42
PTPRF-203ENST00000372407 IL9RQ01113 521 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 MAP7Q14244 749 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 SH2D4BQ5SQS7 431 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 SARM1Q6SZW1 724 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 METTL13Q8N6R0 699 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 CNKSR1Q969H4 720 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 AIFM3Q96NN9 605 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 GBP5Q96PP8 586 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 WDR11Q9BZH6 1224 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 PCDHB6Q9Y5E3 794 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 MYO3AQ8NEV4 1616 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 SOWAHDA6NJG2 315 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 M0QZ92 97 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 DCAF15Q66K64 600 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 ARL6IP4Q66PJ3 421 aaKnown RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 STAG1Q8WVM7 1258 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 SERPINB13Q9UIV8 391 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 PRAMEF22A3QJZ6 481 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 CAPN9O14815 690 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 TTLL1O95922 423 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 RFC1P35251 1148 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 DOK7Q18PE1 504 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 LCORLQ8N3X6 602 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 CEP120Q8N960 986 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 SLC17A8Q8NDX2 589 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 SMCR8Q8TEV9 937 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 VCX3AQ9NNX9 186 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 NRXN1Q9ULB1 1477 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 EIF4A3P38919 411 aaKnown RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 PLTPP55058 493 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 DMTNQ08495 405 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 TXNRD1Q16881 649 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 TRIM11Q96F44 468 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 MMS19Q96T76 1030 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 THAP9Q9H5L6 903 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 CCPG1Q9ULG6 757 aa12.43□□□□□ -0.42
PTPRF-203ENST00000372407 RRP15Q9Y3B9 282 aaKnown RBP12.43□□□□□ -0.42
PTPRF-203ENST00000372407 CYP27A1Q02318 531 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 GABPAQ06546 454 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SLC27A3Q5K4L6 730 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 NLRP10Q86W26 655 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 KANSL2Q9H9L4 492 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ATP8A1Q9Y2Q0 1164 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SPATA31A5Q5VU36 1347 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SPATA31A7Q8IWB4 1347 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 POC1B-GALNT4F8VUJ3 575 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 EVI5O60447 810 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 NT5C2P49902 561 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 POLGP54098 1239 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 PSMD2Q13200 908 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SEPT2Q15019 361 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 TTC19Q6DKK2 380 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 BARGINQ6ZT62 677 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ANKRD35Q8N283 1001 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ZNF653Q96CK0 615 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 PBKQ96KB5 322 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SPZ1Q9BXG8 430 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 SEC31BQ9NQW1 1179 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 NRBP2Q9NSY0 501 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 KAZNQ674X7 775 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ARMC9Q7Z3E5 817 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 CDKL2Q92772 493 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ATP6V0A1Q93050 837 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 NDST4Q9H3R1 872 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ZNF408Q9H9D4 720 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 EFCC1Q9HA90 598 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 ZNF277Q9NRM2 450 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 EMILIN3Q9NT22 766 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 CSADQ9Y600 493 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 CTNND1O60716 968 aaKnown RBP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 INHBAP08476 426 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 CXCR5P32302 372 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 YWHAGP61981 247 aaKnown RBP eCLIP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 C10orf76Q5T2E6 689 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 GBP7Q8N8V2 638 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-203ENST00000372407 PAGE5Q96GU1 130 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 NACC1Q96RE7 527 aa12.42□□□□□ -0.42
PTPRF-203ENST00000372407 PNPLA6Q8IY17 1366 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms