RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 STX6O43752 255 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 ARP10275 920 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 ICAM3P32942 547 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 MTMR1Q13613 665 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 GPRASP2Q96D09 838 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 BCAS3Q9H6U6 928 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 KCNH7Q9NS40 1196 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 MTMR6Q9Y217 621 aa25.2■■□□□ 1.63
SHMT1-203ENST00000354098 FIBPO43427 364 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 ATP9AO75110 1047 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 GJB1P08034 283 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 IRX5P78411 483 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-203ENST00000354098 PRR16Q569H4 304 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 FERMT3Q86UX7 667 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 UIMC1Q96RL1 719 aa25.2■■□□□ 1.62
SHMT1-203ENST00000354098 POTEFA5A3E0 1075 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 SORBS3O60504 671 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 RARBP10826 455 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 PLA2G4DQ86XP0 818 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 U2AF1L4Q8WU68 220 aaKnown RBP25.19■■□□□ 1.62
SHMT1-203ENST00000354098 LENG9Q96B70 501 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 TMEM106CQ9BVX2 250 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 PKD2L1Q9P0L9 805 aa25.19■■□□□ 1.62
SHMT1-203ENST00000354098 CYP3A7-CYP3A51PA0A087WV96 503 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 CCNT1O60563 726 aaKnown RBP25.18■■□□□ 1.62
SHMT1-203ENST00000354098 MSCO60682 206 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 DUSP11O75319 330 aaKnown RBP25.18■■□□□ 1.62
SHMT1-203ENST00000354098 PGK1P00558 417 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 TGFB3P10600 412 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 ATP2B1P20020 1258 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 UBA1P22314 1058 aaKnown RBP25.18■■□□□ 1.62
SHMT1-203ENST00000354098 CYP3A7P24462 503 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 PKP1Q13835 747 aa25.18■■□□□ 1.62
SHMT1-203ENST00000354098 DYNC1LI2O43237 492 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-203ENST00000354098 SGPL1O95470 568 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 KCNV1Q6PIU1 500 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 NIPA1Q7RTP0 329 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 XPNPEP3Q9NQH7 507 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 SLC37A4O43826 429 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 TLK2Q86UE8 772 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 MBOAT7Q96N66 472 aa25.17■■□□□ 1.62
SHMT1-203ENST00000354098 SYNRGQ9UMZ2 1314 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 MAFGO15525 162 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 KCNA2P16389 499 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 TOB1P50616 345 aaPredicted RBP25.16■■□□□ 1.62
SHMT1-203ENST00000354098 Q4G0T1 1027 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 PPP4R3AQ6IN85 833 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 MOXD1Q6UVY6 613 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 CDHR1Q96JP9 859 aa25.16■■□□□ 1.62
SHMT1-203ENST00000354098 AGO4Q9HCK5 861 aaKnown RBP25.16■■□□□ 1.62
SHMT1-203ENST00000354098 DDX25Q9UHL0 483 aaKnown RBP25.16■■□□□ 1.62
SHMT1-203ENST00000354098 MYADML2A6NDP7 307 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 NKRFO15226 690 aaKnown RBP eCLIP25.15■■□□□ 1.62
SHMT1-203ENST00000354098 GGPS1O95749 300 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 GJA8P48165 433 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 ARHGAP1Q07960 439 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 NBR1Q14596 966 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 FOXD4L5Q5VV16 416 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-203ENST00000354098 FOXD4L4Q8WXT5 416 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-203ENST00000354098 CRISPLD2Q9H0B8 497 aa25.15■■□□□ 1.62
SHMT1-203ENST00000354098 CCDC85CA6NKD9 419 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 CTAGE5O15320 804 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 ADAMTS4O75173 837 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 TFRCP02786 760 aaKnown RBP25.14■■□□□ 1.62
SHMT1-203ENST00000354098 MYCNP04198 464 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-203ENST00000354098 SETQ01105 290 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-203ENST00000354098 RESTQ13127 1097 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 ITGB3BPQ13352 177 aaPredicted RBP25.14■■□□□ 1.62
SHMT1-203ENST00000354098 CYFIP1Q7L576 1253 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 OR6J1Q8NGC5 347 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 GJA10Q969M2 543 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 SENP7Q9BQF6 1050 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 OGDHLQ9ULD0 1010 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 Q9Y3F1 56 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 TELO2Q9Y4R8 837 aa25.14■■□□□ 1.62
SHMT1-203ENST00000354098 MSH4O15457 936 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 GH1P01241 217 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 GJA9P57773 515 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 CELF3Q5SZQ8 465 aaKnown RBP25.13■■□□□ 1.61
SHMT1-203ENST00000354098 MYSM1Q5VVJ2 828 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 DHX37Q8IY37 1157 aaKnown RBP25.13■■□□□ 1.61
SHMT1-203ENST00000354098 UPF3AQ9H1J1 476 aaKnown RBP25.13■■□□□ 1.61
SHMT1-203ENST00000354098 C6orf222P0C671 652 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-203ENST00000354098 GCFC2P16383 781 aaKnown RBP25.13■■□□□ 1.61
SHMT1-203ENST00000354098 BEX3Q00994 111 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 NEDD9Q14511 834 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 ZNF174Q15697 407 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 POTEDQ86YR6 584 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 ZNF577Q9BSK1 485 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 AP5M1Q9H0R1 490 aa25.13■■□□□ 1.61
SHMT1-203ENST00000354098 FRMPD3Q5JV73 1810 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 IPO5O00410 1097 aaKnown RBP25.12■■□□□ 1.61
SHMT1-203ENST00000354098 MCM7P33993 719 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 LRRC41Q15345 812 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 TTC38Q5R3I4 469 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 FAM173BQ6P4H8 233 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 BRAPQ7Z569 592 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 NAP1L4Q99733 375 aaKnown RBP25.12■■□□□ 1.61
SHMT1-203ENST00000354098 MLXIPQ9HAP2 919 aa25.12■■□□□ 1.61
SHMT1-203ENST00000354098 NOL7Q9UMY1 257 aaKnown RBP25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms