RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RBM47A0AV96 593 aaKnown RBP25.16■■□□□ 1.62
SDC3-202ENST00000339394 FIBPO43427 364 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 ICAM3P32942 547 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 MCM7P33993 719 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 ADCYAP1R1P41586 468 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 SEMA3FQ13275 785 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 ZNF174Q15697 407 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 CDHR1Q96JP9 859 aa25.16■■□□□ 1.62
SDC3-202ENST00000339394 C11orf97A0A1B0GVM6 126 aaPredicted RBP25.15■■□□□ 1.62
SDC3-202ENST00000339394 ARIH2O95376 493 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 TGFB3P10600 412 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 CCND3P30281 292 aaPredicted RBP25.15■■□□□ 1.62
SDC3-202ENST00000339394 SETQ01105 290 aaPredicted RBP25.15■■□□□ 1.62
SDC3-202ENST00000339394 TTLL4Q14679 1199 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 FOXD4L6Q3SYB3 417 aaPredicted RBP25.15■■□□□ 1.62
SDC3-202ENST00000339394 TMEM63BQ5T3F8 832 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 IQSEC1Q6DN90 963 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 CCDC62Q6P9F0 684 aa25.15■■□□□ 1.62
SDC3-202ENST00000339394 FOXD4L3Q6VB84 417 aaPredicted RBP25.15■■□□□ 1.62
SDC3-202ENST00000339394 CNGA1P29973 690 aa25.14■■□□□ 1.62
SDC3-202ENST00000339394 SP2Q02086 613 aa25.14■■□□□ 1.62
SDC3-202ENST00000339394 KCNV1Q6PIU1 500 aa25.14■■□□□ 1.62
SDC3-202ENST00000339394 MCOLN1Q9GZU1 580 aa25.14■■□□□ 1.62
SDC3-202ENST00000339394 CHMP5Q9NZZ3 219 aa25.14■■□□□ 1.62
SDC3-202ENST00000339394 DDX41Q9UJV9 622 aaKnown RBP25.14■■□□□ 1.62
SDC3-202ENST00000339394 SEPT4O43236 478 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 ATP9AO75110 1047 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 TXNP10599 105 aaKnown RBP25.14■■□□□ 1.61
SDC3-202ENST00000339394 LY6KQ17RY6 165 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 POTEDQ86YR6 584 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 UIMC1Q96RL1 719 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 AGO4Q9HCK5 861 aaKnown RBP25.14■■□□□ 1.61
SDC3-202ENST00000339394 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.14■■□□□ 1.61
SDC3-202ENST00000339394 FAM184BQ9ULE4 1060 aa25.14■■□□□ 1.61
SDC3-202ENST00000339394 MSH4O15457 936 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 ADCY6O43306 1168 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 NEMFO60524 1076 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 AKR1A1P14550 325 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 SMPD1P17405 629 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 TNFAIP2Q03169 654 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 ORC2Q13416 577 aaPredicted RBP25.13■■□□□ 1.61
SDC3-202ENST00000339394 HMX1Q9NP08 348 aaPredicted RBP25.13■■□□□ 1.61
SDC3-202ENST00000339394 PKD2L1Q9P0L9 805 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 MYH7BA7E2Y1 1941 aa25.13■■□□□ 1.61
SDC3-202ENST00000339394 LRRC37A2A6NM11 1700 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 DUSP28Q4G0W2 176 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 ETNPPLQ8TBG4 499 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 SENP7Q9BQF6 1050 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 ZNF577Q9BSK1 485 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 FTOQ9C0B1 505 aaKnown RBP eCLIP25.12■■□□□ 1.61
SDC3-202ENST00000339394 KCNMB3Q9NPA1 279 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 MCM3APO60318 1980 aa25.12■■□□□ 1.61
SDC3-202ENST00000339394 IPO5O00410 1097 aaKnown RBP25.11■■□□□ 1.61
SDC3-202ENST00000339394 MYCP01106 439 aaPredicted RBP25.11■■□□□ 1.61
SDC3-202ENST00000339394 KCNA2P16389 499 aa25.11■■□□□ 1.61
SDC3-202ENST00000339394 UBA1P22314 1058 aaKnown RBP25.11■■□□□ 1.61
SDC3-202ENST00000339394 MTFR1Q15390 333 aa25.11■■□□□ 1.61
SDC3-202ENST00000339394 ARMC5Q96C12 935 aa25.11■■□□□ 1.61
SDC3-202ENST00000339394 TMEM60Q9H2L4 133 aa25.11■■□□□ 1.61
SDC3-202ENST00000339394 ATP6V1DQ9Y5K8 247 aa25.11■■□□□ 1.61
SDC3-202ENST00000339394 PTGS1P23219 599 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 ITGB3BPQ13352 177 aaPredicted RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 CALCRLQ16602 461 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 GJC2Q5T442 439 aaPredicted RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 C4orf32Q8N8J7 132 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 HAS1Q92839 578 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 COPS5Q92905 334 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 GJA10Q969M2 543 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 ZNF333Q96JL9 665 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 USP28Q96RU2 1077 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 BCAS3Q9H6U6 928 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 GNEQ9Y223 722 aaKnown RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 CLIC4Q9Y696 253 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 CEBPZQ03701 1054 aaKnown RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 PTGDRQ13258 359 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 SF3A1Q15459 793 aaKnown RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 ANO1Q5XXA6 986 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 LENG1Q96BZ8 264 aaPredicted RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 ZNF396Q96N95 335 aaPredicted RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 MTMR9Q96QG7 549 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 UNC93B1Q9H1C4 597 aa25.1■■□□□ 1.61
SDC3-202ENST00000339394 TFIP11Q9UBB9 837 aaKnown RBP25.1■■□□□ 1.61
SDC3-202ENST00000339394 TBX3O15119 743 aa25.09■■□□□ 1.61
SDC3-202ENST00000339394 DNM1Q05193 864 aaKnown RBP25.09■■□□□ 1.61
SDC3-202ENST00000339394 NEDD9Q14511 834 aa25.09■■□□□ 1.61
SDC3-202ENST00000339394 SLC5A5Q92911 643 aa25.09■■□□□ 1.61
SDC3-202ENST00000339394 FAM20AQ96MK3 541 aa25.09■■□□□ 1.61
SDC3-202ENST00000339394 NKRFO15226 690 aaKnown RBP eCLIP25.08■■□□□ 1.61
SDC3-202ENST00000339394 DHX15O43143 795 aaKnown RBP25.08■■□□□ 1.61
SDC3-202ENST00000339394 GGPS1O95749 300 aa25.08■■□□□ 1.61
SDC3-202ENST00000339394 CELF3Q5SZQ8 465 aaKnown RBP25.08■■□□□ 1.61
SDC3-202ENST00000339394 CYFIP1Q7L576 1253 aa25.08■■□□□ 1.61
SDC3-202ENST00000339394 CHAMP1Q96JM3 812 aa25.08■■□□□ 1.61
SDC3-202ENST00000339394 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.08■■□□□ 1.61
SDC3-202ENST00000339394 TBC1D22BQ9NU19 505 aa25.08■■□□□ 1.61
SDC3-202ENST00000339394 DDX20Q9UHI6 824 aaKnown RBP25.08■■□□□ 1.61
SDC3-202ENST00000339394 MARCH6O60337 910 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 SORBS3O60504 671 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 DUSP11O75319 330 aaKnown RBP25.07■■□□□ 1.6
SDC3-202ENST00000339394 RARBP10826 455 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms